Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 KRT18P10-201ENST00000388836 1287 ntBASIC22.7■■□□□ 1.22
SLC28A1O00337 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
SLC28A1O00337 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC22.7■■□□□ 1.22
SLC28A1O00337 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
SLC28A1O00337 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC22.7■■□□□ 1.22
SLC28A1O00337 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
SLC28A1O00337 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
SLC28A1O00337 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC22.7■■□□□ 1.22
SLC28A1O00337 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
SLC28A1O00337 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
SLC28A1O00337 LINC00543-201ENST00000567234 1845 ntBASIC22.69■■□□□ 1.22
SLC28A1O00337 AC141586.4-201ENST00000624558 1573 ntBASIC22.69■■□□□ 1.22
SLC28A1O00337 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC22.69■■□□□ 1.22
SLC28A1O00337 MIR4449-201ENST00000578365 66 ntBASIC22.69■■□□□ 1.22
SLC28A1O00337 MIR6089-201ENST00000616698 64 ntBASIC22.69■■□□□ 1.22
SLC28A1O00337 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC22.69■■□□□ 1.22
SLC28A1O00337 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC22.69■■□□□ 1.22
SLC28A1O00337 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC22.68■■□□□ 1.22
SLC28A1O00337 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
SLC28A1O00337 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
SLC28A1O00337 GPX1-201ENST00000419349 1106 ntBASIC22.68■■□□□ 1.22
SLC28A1O00337 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC22.68■■□□□ 1.22
SLC28A1O00337 RAP2CP1-202ENST00000605179 643 ntBASIC22.68■■□□□ 1.22
SLC28A1O00337 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
SLC28A1O00337 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
SLC28A1O00337 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
SLC28A1O00337 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
SLC28A1O00337 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
SLC28A1O00337 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC22.67■■□□□ 1.22
SLC28A1O00337 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
SLC28A1O00337 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
SLC28A1O00337 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC22.66■■□□□ 1.22
SLC28A1O00337 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
SLC28A1O00337 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
SLC28A1O00337 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
SLC28A1O00337 TMEM202-AS1-202ENST00000565181 2325 ntBASIC22.65■■□□□ 1.22
SLC28A1O00337 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
SLC28A1O00337 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
SLC28A1O00337 LSR-205ENST00000427250 1606 ntTSL 2 BASIC22.65■■□□□ 1.22
SLC28A1O00337 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC22.65■■□□□ 1.22
SLC28A1O00337 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
SLC28A1O00337 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC22.65■■□□□ 1.22
SLC28A1O00337 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC22.65■■□□□ 1.22
SLC28A1O00337 AC026202.3-201ENST00000600805 1127 ntBASIC22.65■■□□□ 1.22
SLC28A1O00337 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC22.65■■□□□ 1.22
SLC28A1O00337 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC22.65■■□□□ 1.22
SLC28A1O00337 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
SLC28A1O00337 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
SLC28A1O00337 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
SLC28A1O00337 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
SLC28A1O00337 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC22.64■■□□□ 1.21
SLC28A1O00337 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC22.64■■□□□ 1.21
SLC28A1O00337 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
SLC28A1O00337 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC22.63■■□□□ 1.21
SLC28A1O00337 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
SLC28A1O00337 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC22.63■■□□□ 1.21
SLC28A1O00337 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
SLC28A1O00337 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
SLC28A1O00337 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
SLC28A1O00337 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC22.63■■□□□ 1.21
SLC28A1O00337 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC22.62■■□□□ 1.21
SLC28A1O00337 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC22.62■■□□□ 1.21
SLC28A1O00337 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC22.62■■□□□ 1.21
SLC28A1O00337 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC22.62■■□□□ 1.21
SLC28A1O00337 MBP-237ENST00000579129 1052 ntTSL 5 BASIC22.62■■□□□ 1.21
SLC28A1O00337 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
SLC28A1O00337 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
SLC28A1O00337 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
SLC28A1O00337 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
SLC28A1O00337 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
SLC28A1O00337 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC22.61■■□□□ 1.21
SLC28A1O00337 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC22.61■■□□□ 1.21
SLC28A1O00337 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
SLC28A1O00337 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC22.61■■□□□ 1.21
SLC28A1O00337 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC22.61■■□□□ 1.21
SLC28A1O00337 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
SLC28A1O00337 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
SLC28A1O00337 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC22.6■■□□□ 1.21
SLC28A1O00337 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
SLC28A1O00337 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
SLC28A1O00337 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC22.59■■□□□ 1.21
SLC28A1O00337 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
SLC28A1O00337 HES4-204ENST00000484667 667 ntTSL 3 BASIC22.59■■□□□ 1.21
SLC28A1O00337 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
SLC28A1O00337 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
SLC28A1O00337 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC22.58■■□□□ 1.21
SLC28A1O00337 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
SLC28A1O00337 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC22.58■■□□□ 1.21
SLC28A1O00337 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
SLC28A1O00337 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC22.58■■□□□ 1.2
SLC28A1O00337 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC22.58■■□□□ 1.2
SLC28A1O00337 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
SLC28A1O00337 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC22.57■■□□□ 1.2
SLC28A1O00337 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC22.57■■□□□ 1.2
SLC28A1O00337 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC22.57■■□□□ 1.2
SLC28A1O00337 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC22.57■■□□□ 1.2
SLC28A1O00337 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC22.57■■□□□ 1.2
SLC28A1O00337 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
SLC28A1O00337 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC22.57■■□□□ 1.2
SLC28A1O00337 RARA-203ENST00000394086 2008 ntTSL 2 BASIC22.57■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 50.8 ms