Protein–RNA interactions for Protein: A6NM62

LRRC53, Leucine-rich repeat-containing protein 53, humanhuman

Predictions only

Length 1,247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC53A6NM62 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
LRRC53A6NM62 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
LRRC53A6NM62 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC25.48■■□□□ 1.67
LRRC53A6NM62 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
LRRC53A6NM62 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
LRRC53A6NM62 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
LRRC53A6NM62 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC25.48■■□□□ 1.67
LRRC53A6NM62 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
LRRC53A6NM62 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
LRRC53A6NM62 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC25.48■■□□□ 1.67
LRRC53A6NM62 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
LRRC53A6NM62 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
LRRC53A6NM62 LINC00543-201ENST00000567234 1845 ntBASIC25.47■■□□□ 1.67
LRRC53A6NM62 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
LRRC53A6NM62 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
LRRC53A6NM62 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC25.46■■□□□ 1.67
LRRC53A6NM62 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC25.46■■□□□ 1.67
LRRC53A6NM62 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC25.46■■□□□ 1.67
LRRC53A6NM62 AC007029.1-201ENST00000604183 313 ntBASIC25.46■■□□□ 1.67
LRRC53A6NM62 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC25.46■■□□□ 1.67
LRRC53A6NM62 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC25.45■■□□□ 1.67
LRRC53A6NM62 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC25.45■■□□□ 1.67
LRRC53A6NM62 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC25.45■■□□□ 1.66
LRRC53A6NM62 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
LRRC53A6NM62 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC25.45■■□□□ 1.66
LRRC53A6NM62 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
LRRC53A6NM62 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
LRRC53A6NM62 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC25.45■■□□□ 1.66
LRRC53A6NM62 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC25.44■■□□□ 1.66
LRRC53A6NM62 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
LRRC53A6NM62 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC25.44■■□□□ 1.66
LRRC53A6NM62 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC25.44■■□□□ 1.66
LRRC53A6NM62 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC25.44■■□□□ 1.66
LRRC53A6NM62 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC25.44■■□□□ 1.66
LRRC53A6NM62 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
LRRC53A6NM62 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC25.44■■□□□ 1.66
LRRC53A6NM62 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC25.43■■□□□ 1.66
LRRC53A6NM62 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC25.43■■□□□ 1.66
LRRC53A6NM62 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC25.43■■□□□ 1.66
LRRC53A6NM62 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC25.43■■□□□ 1.66
LRRC53A6NM62 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
LRRC53A6NM62 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC25.43■■□□□ 1.66
LRRC53A6NM62 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
LRRC53A6NM62 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC25.42■■□□□ 1.66
LRRC53A6NM62 MIR6089-201ENST00000616698 64 ntBASIC25.42■■□□□ 1.66
LRRC53A6NM62 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
LRRC53A6NM62 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
LRRC53A6NM62 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
LRRC53A6NM62 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
LRRC53A6NM62 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC25.41■■□□□ 1.66
LRRC53A6NM62 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC25.41■■□□□ 1.66
LRRC53A6NM62 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
LRRC53A6NM62 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC25.41■■□□□ 1.66
LRRC53A6NM62 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC25.41■■□□□ 1.66
LRRC53A6NM62 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
LRRC53A6NM62 LSR-205ENST00000427250 1606 ntTSL 2 BASIC25.41■■□□□ 1.66
LRRC53A6NM62 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
LRRC53A6NM62 RAP2CP1-202ENST00000605179 643 ntBASIC25.4■■□□□ 1.66
LRRC53A6NM62 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
LRRC53A6NM62 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
LRRC53A6NM62 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
LRRC53A6NM62 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC25.39■■□□□ 1.66
LRRC53A6NM62 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC25.39■■□□□ 1.66
LRRC53A6NM62 MIR4449-201ENST00000578365 66 ntBASIC25.39■■□□□ 1.66
LRRC53A6NM62 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC25.39■■□□□ 1.65
LRRC53A6NM62 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.65
LRRC53A6NM62 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC25.39■■□□□ 1.65
LRRC53A6NM62 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.65
LRRC53A6NM62 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
LRRC53A6NM62 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC25.38■■□□□ 1.65
LRRC53A6NM62 GFER-205ENST00000569451 517 ntTSL 5 BASIC25.38■■□□□ 1.65
LRRC53A6NM62 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC25.38■■□□□ 1.65
LRRC53A6NM62 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC25.38■■□□□ 1.65
LRRC53A6NM62 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
LRRC53A6NM62 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
LRRC53A6NM62 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
LRRC53A6NM62 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC25.37■■□□□ 1.65
LRRC53A6NM62 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
LRRC53A6NM62 GPX1-201ENST00000419349 1106 ntBASIC25.37■■□□□ 1.65
LRRC53A6NM62 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC25.37■■□□□ 1.65
LRRC53A6NM62 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
LRRC53A6NM62 RARA-203ENST00000394086 2008 ntTSL 2 BASIC25.37■■□□□ 1.65
LRRC53A6NM62 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
LRRC53A6NM62 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
LRRC53A6NM62 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC25.36■■□□□ 1.65
LRRC53A6NM62 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
LRRC53A6NM62 AC141586.4-201ENST00000624558 1573 ntBASIC25.36■■□□□ 1.65
LRRC53A6NM62 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
LRRC53A6NM62 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
LRRC53A6NM62 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC25.36■■□□□ 1.65
LRRC53A6NM62 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC25.36■■□□□ 1.65
LRRC53A6NM62 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
LRRC53A6NM62 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
LRRC53A6NM62 AC026202.3-201ENST00000600805 1127 ntBASIC25.35■■□□□ 1.65
LRRC53A6NM62 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
LRRC53A6NM62 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
LRRC53A6NM62 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
LRRC53A6NM62 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC25.34■■□□□ 1.65
LRRC53A6NM62 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
LRRC53A6NM62 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms