Protein–RNA interactions for Protein: A0A0B4J238

TRAV1-2, T-cell receptor alpha variable 1-2 (Fragment), humanhuman

Predictions only

Length 106 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-2A0A0B4J238 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TRAV1-2A0A0B4J238 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
TRAV1-2A0A0B4J238 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TRAV1-2A0A0B4J238 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
TRAV1-2A0A0B4J238 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
TRAV1-2A0A0B4J238 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC20.54■□□□□ 0.88
TRAV1-2A0A0B4J238 LINC01971-201ENST00000617888 1048 ntBASIC20.54■□□□□ 0.88
TRAV1-2A0A0B4J238 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRAV1-2A0A0B4J238 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
TRAV1-2A0A0B4J238 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRAV1-2A0A0B4J238 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TRAV1-2A0A0B4J238 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TRAV1-2A0A0B4J238 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC20.53■□□□□ 0.88
TRAV1-2A0A0B4J238 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TRAV1-2A0A0B4J238 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC20.53■□□□□ 0.88
TRAV1-2A0A0B4J238 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TRAV1-2A0A0B4J238 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TRAV1-2A0A0B4J238 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
TRAV1-2A0A0B4J238 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
TRAV1-2A0A0B4J238 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC20.52■□□□□ 0.88
TRAV1-2A0A0B4J238 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC20.52■□□□□ 0.88
TRAV1-2A0A0B4J238 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
TRAV1-2A0A0B4J238 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
TRAV1-2A0A0B4J238 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC20.52■□□□□ 0.88
TRAV1-2A0A0B4J238 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC20.52■□□□□ 0.88
TRAV1-2A0A0B4J238 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
TRAV1-2A0A0B4J238 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
TRAV1-2A0A0B4J238 SHD-204ENST00000599689 1729 ntTSL 5 BASIC20.52■□□□□ 0.88
TRAV1-2A0A0B4J238 LSR-205ENST00000427250 1606 ntTSL 2 BASIC20.52■□□□□ 0.88
TRAV1-2A0A0B4J238 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TRAV1-2A0A0B4J238 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
TRAV1-2A0A0B4J238 ME2-208ENST00000638937 2471 ntTSL 5 BASIC20.51■□□□□ 0.87
TRAV1-2A0A0B4J238 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
TRAV1-2A0A0B4J238 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
TRAV1-2A0A0B4J238 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TRAV1-2A0A0B4J238 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
TRAV1-2A0A0B4J238 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TRAV1-2A0A0B4J238 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
TRAV1-2A0A0B4J238 ABCB10P4-201ENST00000566803 2184 ntBASIC20.51■□□□□ 0.87
TRAV1-2A0A0B4J238 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TRAV1-2A0A0B4J238 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
TRAV1-2A0A0B4J238 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
TRAV1-2A0A0B4J238 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC20.5■□□□□ 0.87
TRAV1-2A0A0B4J238 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
TRAV1-2A0A0B4J238 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
TRAV1-2A0A0B4J238 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC20.49■□□□□ 0.87
TRAV1-2A0A0B4J238 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
TRAV1-2A0A0B4J238 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
TRAV1-2A0A0B4J238 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
TRAV1-2A0A0B4J238 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TRAV1-2A0A0B4J238 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC20.49■□□□□ 0.87
TRAV1-2A0A0B4J238 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
TRAV1-2A0A0B4J238 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
TRAV1-2A0A0B4J238 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TRAV1-2A0A0B4J238 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
TRAV1-2A0A0B4J238 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
TRAV1-2A0A0B4J238 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TRAV1-2A0A0B4J238 MED25-210ENST00000612854 801 ntTSL 5 BASIC20.48■□□□□ 0.87
TRAV1-2A0A0B4J238 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
TRAV1-2A0A0B4J238 MED25-214ENST00000622402 642 ntTSL 5 BASIC20.48■□□□□ 0.87
TRAV1-2A0A0B4J238 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
TRAV1-2A0A0B4J238 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC20.48■□□□□ 0.87
TRAV1-2A0A0B4J238 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TRAV1-2A0A0B4J238 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
TRAV1-2A0A0B4J238 NFE2L3P1-201ENST00000588207 1959 ntBASIC20.47■□□□□ 0.87
TRAV1-2A0A0B4J238 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
TRAV1-2A0A0B4J238 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
TRAV1-2A0A0B4J238 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC20.47■□□□□ 0.87
TRAV1-2A0A0B4J238 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
TRAV1-2A0A0B4J238 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
TRAV1-2A0A0B4J238 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRAV1-2A0A0B4J238 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRAV1-2A0A0B4J238 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRAV1-2A0A0B4J238 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
TRAV1-2A0A0B4J238 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
TRAV1-2A0A0B4J238 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC20.46■□□□□ 0.87
TRAV1-2A0A0B4J238 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC20.46■□□□□ 0.87
TRAV1-2A0A0B4J238 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
TRAV1-2A0A0B4J238 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRAV1-2A0A0B4J238 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
TRAV1-2A0A0B4J238 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
TRAV1-2A0A0B4J238 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC20.45■□□□□ 0.86
TRAV1-2A0A0B4J238 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
TRAV1-2A0A0B4J238 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TRAV1-2A0A0B4J238 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
TRAV1-2A0A0B4J238 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
TRAV1-2A0A0B4J238 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC20.45■□□□□ 0.86
TRAV1-2A0A0B4J238 HLA-V-202ENST00000446817 847 ntBASIC20.45■□□□□ 0.86
TRAV1-2A0A0B4J238 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TRAV1-2A0A0B4J238 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TRAV1-2A0A0B4J238 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC20.45■□□□□ 0.86
TRAV1-2A0A0B4J238 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC20.45■□□□□ 0.86
TRAV1-2A0A0B4J238 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TRAV1-2A0A0B4J238 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC20.44■□□□□ 0.86
TRAV1-2A0A0B4J238 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
TRAV1-2A0A0B4J238 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
TRAV1-2A0A0B4J238 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
TRAV1-2A0A0B4J238 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TRAV1-2A0A0B4J238 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC20.43■□□□□ 0.86
TRAV1-2A0A0B4J238 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 14.8 ms