Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CUEDC1Q9NWM3 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CUEDC1Q9NWM3 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC15.74■□□□□ 0.11
CUEDC1Q9NWM3 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC15.74■□□□□ 0.11
CUEDC1Q9NWM3 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC15.74■□□□□ 0.11
CUEDC1Q9NWM3 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
CUEDC1Q9NWM3 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
CUEDC1Q9NWM3 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CUEDC1Q9NWM3 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CUEDC1Q9NWM3 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC15.73■□□□□ 0.11
CUEDC1Q9NWM3 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
CUEDC1Q9NWM3 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CUEDC1Q9NWM3 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CUEDC1Q9NWM3 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC15.73■□□□□ 0.11
CUEDC1Q9NWM3 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
CUEDC1Q9NWM3 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC15.73■□□□□ 0.11
CUEDC1Q9NWM3 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
CUEDC1Q9NWM3 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
CUEDC1Q9NWM3 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC15.73■□□□□ 0.11
CUEDC1Q9NWM3 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
CUEDC1Q9NWM3 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CUEDC1Q9NWM3 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC15.73■□□□□ 0.11
CUEDC1Q9NWM3 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CUEDC1Q9NWM3 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC15.73■□□□□ 0.11
CUEDC1Q9NWM3 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC15.73■□□□□ 0.11
CUEDC1Q9NWM3 KRT18P32-201ENST00000424695 1287 ntBASIC15.73■□□□□ 0.11
CUEDC1Q9NWM3 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CUEDC1Q9NWM3 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CUEDC1Q9NWM3 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC15.73■□□□□ 0.11
CUEDC1Q9NWM3 RNA5SP421-201ENST00000516864 134 ntBASIC15.73■□□□□ 0.11
CUEDC1Q9NWM3 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC15.73■□□□□ 0.11
CUEDC1Q9NWM3 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
CUEDC1Q9NWM3 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC15.73■□□□□ 0.11
CUEDC1Q9NWM3 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC15.73■□□□□ 0.11
CUEDC1Q9NWM3 SPTSSB-204ENST00000617024 1292 ntBASIC15.73■□□□□ 0.11
CUEDC1Q9NWM3 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC15.73■□□□□ 0.11
CUEDC1Q9NWM3 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CUEDC1Q9NWM3 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC15.73■□□□□ 0.11
CUEDC1Q9NWM3 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CUEDC1Q9NWM3 CYP2T1P-202ENST00000641596 2535 ntBASIC15.73■□□□□ 0.11
CUEDC1Q9NWM3 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
CUEDC1Q9NWM3 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC15.73■□□□□ 0.11
CUEDC1Q9NWM3 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
CUEDC1Q9NWM3 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC15.73■□□□□ 0.11
CUEDC1Q9NWM3 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CUEDC1Q9NWM3 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
CUEDC1Q9NWM3 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
CUEDC1Q9NWM3 GOLGA6L17P-202ENST00000614358 1398 ntBASIC15.73■□□□□ 0.11
CUEDC1Q9NWM3 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC15.73■□□□□ 0.11
CUEDC1Q9NWM3 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CUEDC1Q9NWM3 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC15.73■□□□□ 0.11
CUEDC1Q9NWM3 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CUEDC1Q9NWM3 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
CUEDC1Q9NWM3 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CUEDC1Q9NWM3 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC15.73■□□□□ 0.11
CUEDC1Q9NWM3 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
CUEDC1Q9NWM3 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CUEDC1Q9NWM3 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
CUEDC1Q9NWM3 PGR-209ENST00000617858 2816 ntTSL 5 BASIC15.72■□□□□ 0.11
CUEDC1Q9NWM3 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
CUEDC1Q9NWM3 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CUEDC1Q9NWM3 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC15.72■□□□□ 0.11
CUEDC1Q9NWM3 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC15.72■□□□□ 0.11
CUEDC1Q9NWM3 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CUEDC1Q9NWM3 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
CUEDC1Q9NWM3 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CUEDC1Q9NWM3 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
CUEDC1Q9NWM3 MTHFR-217ENST00000641820 1569 ntBASIC15.72■□□□□ 0.11
CUEDC1Q9NWM3 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
CUEDC1Q9NWM3 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC15.72■□□□□ 0.11
CUEDC1Q9NWM3 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CUEDC1Q9NWM3 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CUEDC1Q9NWM3 COPE-202ENST00000349893 948 ntTSL 2 BASIC15.72■□□□□ 0.11
CUEDC1Q9NWM3 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC15.72■□□□□ 0.11
CUEDC1Q9NWM3 AC005034.1-201ENST00000426657 489 ntBASIC15.72■□□□□ 0.11
CUEDC1Q9NWM3 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC15.72■□□□□ 0.11
CUEDC1Q9NWM3 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CUEDC1Q9NWM3 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC15.72■□□□□ 0.11
CUEDC1Q9NWM3 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CUEDC1Q9NWM3 TSFM-210ENST00000550559 897 ntTSL 5 BASIC15.72■□□□□ 0.11
CUEDC1Q9NWM3 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC15.72■□□□□ 0.11
CUEDC1Q9NWM3 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC15.72■□□□□ 0.11
CUEDC1Q9NWM3 AL035252.4-201ENST00000624174 288 ntBASIC15.72■□□□□ 0.11
CUEDC1Q9NWM3 AC084121.4-201ENST00000641598 221 ntBASIC15.72■□□□□ 0.11
CUEDC1Q9NWM3 AF228730.8-201ENST00000642140 221 ntBASIC15.72■□□□□ 0.11
CUEDC1Q9NWM3 AL596087.1-201ENST00000400979 1969 ntBASIC15.72■□□□□ 0.11
CUEDC1Q9NWM3 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CUEDC1Q9NWM3 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC15.72■□□□□ 0.11
CUEDC1Q9NWM3 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
CUEDC1Q9NWM3 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CUEDC1Q9NWM3 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC15.72■□□□□ 0.11
CUEDC1Q9NWM3 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CUEDC1Q9NWM3 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC15.72■□□□□ 0.11
CUEDC1Q9NWM3 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC15.72■□□□□ 0.11
CUEDC1Q9NWM3 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC15.72■□□□□ 0.11
CUEDC1Q9NWM3 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CUEDC1Q9NWM3 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC15.72■□□□□ 0.11
CUEDC1Q9NWM3 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CUEDC1Q9NWM3 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
CUEDC1Q9NWM3 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms