Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 AC092474.2-201ENST00000424288 719 ntBASIC16.77■□□□□ 0.28
PCDH9Q9HC56 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
PCDH9Q9HC56 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
PCDH9Q9HC56 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
PCDH9Q9HC56 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC16.77■□□□□ 0.28
PCDH9Q9HC56 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC16.77■□□□□ 0.28
PCDH9Q9HC56 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC16.77■□□□□ 0.28
PCDH9Q9HC56 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC16.77■□□□□ 0.28
PCDH9Q9HC56 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC16.77■□□□□ 0.28
PCDH9Q9HC56 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC16.77■□□□□ 0.28
PCDH9Q9HC56 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC16.77■□□□□ 0.27
PCDH9Q9HC56 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
PCDH9Q9HC56 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
PCDH9Q9HC56 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC16.77■□□□□ 0.27
PCDH9Q9HC56 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.27
PCDH9Q9HC56 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
PCDH9Q9HC56 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC16.77■□□□□ 0.27
PCDH9Q9HC56 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
PCDH9Q9HC56 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
PCDH9Q9HC56 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.27
PCDH9Q9HC56 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
PCDH9Q9HC56 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
PCDH9Q9HC56 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PCDH9Q9HC56 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PCDH9Q9HC56 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PCDH9Q9HC56 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
PCDH9Q9HC56 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PCDH9Q9HC56 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
PCDH9Q9HC56 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC16.76■□□□□ 0.27
PCDH9Q9HC56 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PCDH9Q9HC56 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PCDH9Q9HC56 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC16.76■□□□□ 0.27
PCDH9Q9HC56 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC16.76■□□□□ 0.27
PCDH9Q9HC56 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC16.76■□□□□ 0.27
PCDH9Q9HC56 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC16.76■□□□□ 0.27
PCDH9Q9HC56 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PCDH9Q9HC56 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PCDH9Q9HC56 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC16.76■□□□□ 0.27
PCDH9Q9HC56 NEK7-201ENST00000367383 586 ntTSL 2 BASIC16.76■□□□□ 0.27
PCDH9Q9HC56 YBX2P1-201ENST00000394192 760 ntBASIC16.76■□□□□ 0.27
PCDH9Q9HC56 COX10-202ENST00000429152 875 ntTSL 2 BASIC16.76■□□□□ 0.27
PCDH9Q9HC56 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC16.76■□□□□ 0.27
PCDH9Q9HC56 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PCDH9Q9HC56 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC16.76■□□□□ 0.27
PCDH9Q9HC56 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC16.76■□□□□ 0.27
PCDH9Q9HC56 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC16.76■□□□□ 0.27
PCDH9Q9HC56 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC16.76■□□□□ 0.27
PCDH9Q9HC56 AC091812.2-201ENST00000619081 385 ntBASIC16.76■□□□□ 0.27
PCDH9Q9HC56 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC16.76■□□□□ 0.27
PCDH9Q9HC56 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
PCDH9Q9HC56 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PCDH9Q9HC56 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
PCDH9Q9HC56 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PCDH9Q9HC56 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC16.76■□□□□ 0.27
PCDH9Q9HC56 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
PCDH9Q9HC56 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC16.76■□□□□ 0.27
PCDH9Q9HC56 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
PCDH9Q9HC56 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC16.76■□□□□ 0.27
PCDH9Q9HC56 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC16.76■□□□□ 0.27
PCDH9Q9HC56 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PCDH9Q9HC56 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC16.75■□□□□ 0.27
PCDH9Q9HC56 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC16.75■□□□□ 0.27
PCDH9Q9HC56 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC16.75■□□□□ 0.27
PCDH9Q9HC56 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
PCDH9Q9HC56 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PCDH9Q9HC56 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PCDH9Q9HC56 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC16.75■□□□□ 0.27
PCDH9Q9HC56 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC16.75■□□□□ 0.27
PCDH9Q9HC56 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
PCDH9Q9HC56 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PCDH9Q9HC56 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC16.75■□□□□ 0.27
PCDH9Q9HC56 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
PCDH9Q9HC56 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC16.75■□□□□ 0.27
PCDH9Q9HC56 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PCDH9Q9HC56 FAM58CP-201ENST00000435741 640 ntBASIC16.75■□□□□ 0.27
PCDH9Q9HC56 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
PCDH9Q9HC56 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC16.75■□□□□ 0.27
PCDH9Q9HC56 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC16.75■□□□□ 0.27
PCDH9Q9HC56 AL161645.1-201ENST00000622716 1255 ntBASIC16.75■□□□□ 0.27
PCDH9Q9HC56 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
PCDH9Q9HC56 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PCDH9Q9HC56 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PCDH9Q9HC56 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC16.75■□□□□ 0.27
PCDH9Q9HC56 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PCDH9Q9HC56 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC16.75■□□□□ 0.27
PCDH9Q9HC56 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC16.75■□□□□ 0.27
PCDH9Q9HC56 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PCDH9Q9HC56 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PCDH9Q9HC56 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
PCDH9Q9HC56 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PCDH9Q9HC56 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PCDH9Q9HC56 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC16.75■□□□□ 0.27
PCDH9Q9HC56 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC16.75■□□□□ 0.27
PCDH9Q9HC56 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PCDH9Q9HC56 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC16.74■□□□□ 0.27
PCDH9Q9HC56 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC16.74■□□□□ 0.27
PCDH9Q9HC56 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PCDH9Q9HC56 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
PCDH9Q9HC56 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC16.74■□□□□ 0.27
PCDH9Q9HC56 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC16.74■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 179.9 ms