Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 SSH2-210ENST00000582084 560 ntTSL 3 BASIC17.76■□□□□ 0.43
TRAIPQ9BWF2 SPDYE22P-201ENST00000582158 798 ntBASIC17.76■□□□□ 0.43
TRAIPQ9BWF2 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC17.76■□□□□ 0.43
TRAIPQ9BWF2 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRAIPQ9BWF2 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRAIPQ9BWF2 AC092171.3-201ENST00000610122 2651 ntBASIC17.76■□□□□ 0.43
TRAIPQ9BWF2 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRAIPQ9BWF2 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRAIPQ9BWF2 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
TRAIPQ9BWF2 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRAIPQ9BWF2 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRAIPQ9BWF2 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRAIPQ9BWF2 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRAIPQ9BWF2 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRAIPQ9BWF2 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
TRAIPQ9BWF2 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRAIPQ9BWF2 BTBD7P1-201ENST00000447253 1453 ntBASIC17.75■□□□□ 0.43
TRAIPQ9BWF2 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
TRAIPQ9BWF2 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC17.75■□□□□ 0.43
TRAIPQ9BWF2 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRAIPQ9BWF2 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC17.75■□□□□ 0.43
TRAIPQ9BWF2 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC17.75■□□□□ 0.43
TRAIPQ9BWF2 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRAIPQ9BWF2 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRAIPQ9BWF2 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRAIPQ9BWF2 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRAIPQ9BWF2 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRAIPQ9BWF2 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
TRAIPQ9BWF2 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
TRAIPQ9BWF2 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC17.75■□□□□ 0.43
TRAIPQ9BWF2 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRAIPQ9BWF2 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
TRAIPQ9BWF2 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
TRAIPQ9BWF2 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC17.75■□□□□ 0.43
TRAIPQ9BWF2 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRAIPQ9BWF2 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRAIPQ9BWF2 CFL1-212ENST00000531413 636 ntTSL 3 BASIC17.75■□□□□ 0.43
TRAIPQ9BWF2 AC005225.4-201ENST00000557330 545 ntBASIC17.75■□□□□ 0.43
TRAIPQ9BWF2 NAA38-207ENST00000576861 556 ntTSL 3 BASIC17.75■□□□□ 0.43
TRAIPQ9BWF2 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC17.75■□□□□ 0.43
TRAIPQ9BWF2 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC17.75■□□□□ 0.43
TRAIPQ9BWF2 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRAIPQ9BWF2 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC17.75■□□□□ 0.43
TRAIPQ9BWF2 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRAIPQ9BWF2 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRAIPQ9BWF2 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC17.75■□□□□ 0.43
TRAIPQ9BWF2 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
TRAIPQ9BWF2 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
TRAIPQ9BWF2 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
TRAIPQ9BWF2 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRAIPQ9BWF2 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC17.75■□□□□ 0.43
TRAIPQ9BWF2 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRAIPQ9BWF2 CES3-203ENST00000543856 3178 ntTSL 2 BASIC17.75■□□□□ 0.43
TRAIPQ9BWF2 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
TRAIPQ9BWF2 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC17.74■□□□□ 0.43
TRAIPQ9BWF2 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
TRAIPQ9BWF2 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRAIPQ9BWF2 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC17.74■□□□□ 0.43
TRAIPQ9BWF2 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC17.74■□□□□ 0.43
TRAIPQ9BWF2 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
TRAIPQ9BWF2 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
TRAIPQ9BWF2 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRAIPQ9BWF2 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRAIPQ9BWF2 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
TRAIPQ9BWF2 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
TRAIPQ9BWF2 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
TRAIPQ9BWF2 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
TRAIPQ9BWF2 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC17.74■□□□□ 0.43
TRAIPQ9BWF2 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRAIPQ9BWF2 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
TRAIPQ9BWF2 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
TRAIPQ9BWF2 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRAIPQ9BWF2 METTL26-204ENST00000397665 558 ntTSL 2 BASIC17.74■□□□□ 0.43
TRAIPQ9BWF2 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC17.74■□□□□ 0.43
TRAIPQ9BWF2 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC17.74■□□□□ 0.43
TRAIPQ9BWF2 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC17.74■□□□□ 0.43
TRAIPQ9BWF2 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
TRAIPQ9BWF2 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRAIPQ9BWF2 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRAIPQ9BWF2 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC17.74■□□□□ 0.43
TRAIPQ9BWF2 AC026979.3-201ENST00000607315 403 ntBASIC17.74■□□□□ 0.43
TRAIPQ9BWF2 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC17.74■□□□□ 0.43
TRAIPQ9BWF2 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRAIPQ9BWF2 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRAIPQ9BWF2 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRAIPQ9BWF2 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC17.74■□□□□ 0.43
TRAIPQ9BWF2 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRAIPQ9BWF2 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
TRAIPQ9BWF2 TDG-209ENST00000544861 1387 ntTSL 2 BASIC17.74■□□□□ 0.43
TRAIPQ9BWF2 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
TRAIPQ9BWF2 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRAIPQ9BWF2 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRAIPQ9BWF2 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRAIPQ9BWF2 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TRAIPQ9BWF2 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TRAIPQ9BWF2 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
TRAIPQ9BWF2 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
TRAIPQ9BWF2 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC17.73■□□□□ 0.43
TRAIPQ9BWF2 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC17.73■□□□□ 0.43
TRAIPQ9BWF2 AC006449.5-201ENST00000610658 2098 ntBASIC17.73■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms