Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM56Q9BRZ2 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC16.62■□□□□ 0.25
TRIM56Q9BRZ2 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM56Q9BRZ2 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM56Q9BRZ2 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM56Q9BRZ2 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
TRIM56Q9BRZ2 HLA-DQB2-231ENST00000435145 2026 ntBASIC16.62■□□□□ 0.25
TRIM56Q9BRZ2 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM56Q9BRZ2 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC16.62■□□□□ 0.25
TRIM56Q9BRZ2 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM56Q9BRZ2 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM56Q9BRZ2 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM56Q9BRZ2 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC16.61■□□□□ 0.25
TRIM56Q9BRZ2 AC112504.1-201ENST00000623415 1841 ntBASIC16.61■□□□□ 0.25
TRIM56Q9BRZ2 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC16.61■□□□□ 0.25
TRIM56Q9BRZ2 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM56Q9BRZ2 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM56Q9BRZ2 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM56Q9BRZ2 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC16.61■□□□□ 0.25
TRIM56Q9BRZ2 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM56Q9BRZ2 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM56Q9BRZ2 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM56Q9BRZ2 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM56Q9BRZ2 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM56Q9BRZ2 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM56Q9BRZ2 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM56Q9BRZ2 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC16.61■□□□□ 0.25
TRIM56Q9BRZ2 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
TRIM56Q9BRZ2 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM56Q9BRZ2 DDT-204ENST00000404092 805 ntTSL 3 BASIC16.61■□□□□ 0.25
TRIM56Q9BRZ2 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC16.61■□□□□ 0.25
TRIM56Q9BRZ2 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC16.61■□□□□ 0.25
TRIM56Q9BRZ2 AL513480.1-201ENST00000451731 511 ntBASIC16.61■□□□□ 0.25
TRIM56Q9BRZ2 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC16.61■□□□□ 0.25
TRIM56Q9BRZ2 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC16.61■□□□□ 0.25
TRIM56Q9BRZ2 IGHV3-22-201ENST00000520721 359 ntBASIC16.61■□□□□ 0.25
TRIM56Q9BRZ2 LITAF-211ENST00000572255 516 ntTSL 4 BASIC16.61■□□□□ 0.25
TRIM56Q9BRZ2 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC16.61■□□□□ 0.25
TRIM56Q9BRZ2 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
TRIM56Q9BRZ2 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM56Q9BRZ2 AL031055.1-201ENST00000606362 631 ntBASIC16.61■□□□□ 0.25
TRIM56Q9BRZ2 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM56Q9BRZ2 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC16.61■□□□□ 0.25
TRIM56Q9BRZ2 AC010507.1-201ENST00000633895 436 ntBASIC16.61■□□□□ 0.25
TRIM56Q9BRZ2 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
TRIM56Q9BRZ2 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM56Q9BRZ2 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM56Q9BRZ2 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
TRIM56Q9BRZ2 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM56Q9BRZ2 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM56Q9BRZ2 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM56Q9BRZ2 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC16.61■□□□□ 0.25
TRIM56Q9BRZ2 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM56Q9BRZ2 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM56Q9BRZ2 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM56Q9BRZ2 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC16.61■□□□□ 0.25
TRIM56Q9BRZ2 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM56Q9BRZ2 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
TRIM56Q9BRZ2 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM56Q9BRZ2 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM56Q9BRZ2 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC16.6■□□□□ 0.25
TRIM56Q9BRZ2 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM56Q9BRZ2 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM56Q9BRZ2 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
TRIM56Q9BRZ2 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM56Q9BRZ2 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
TRIM56Q9BRZ2 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC16.6■□□□□ 0.25
TRIM56Q9BRZ2 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM56Q9BRZ2 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM56Q9BRZ2 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
TRIM56Q9BRZ2 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM56Q9BRZ2 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM56Q9BRZ2 VN2R19P-201ENST00000442399 1052 ntBASIC16.6■□□□□ 0.25
TRIM56Q9BRZ2 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC16.6■□□□□ 0.25
TRIM56Q9BRZ2 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM56Q9BRZ2 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM56Q9BRZ2 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC16.6■□□□□ 0.25
TRIM56Q9BRZ2 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM56Q9BRZ2 RPS15-207ENST00000591032 550 ntTSL 3 BASIC16.6■□□□□ 0.25
TRIM56Q9BRZ2 RPS15-212ENST00000593052 629 ntTSL 2 BASIC16.6■□□□□ 0.25
TRIM56Q9BRZ2 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC16.6■□□□□ 0.25
TRIM56Q9BRZ2 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC16.6■□□□□ 0.25
TRIM56Q9BRZ2 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM56Q9BRZ2 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
TRIM56Q9BRZ2 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM56Q9BRZ2 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM56Q9BRZ2 VILL-207ENST00000465644 1857 ntTSL 5 BASIC16.6■□□□□ 0.25
TRIM56Q9BRZ2 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC16.6■□□□□ 0.25
TRIM56Q9BRZ2 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC16.6■□□□□ 0.25
TRIM56Q9BRZ2 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM56Q9BRZ2 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
TRIM56Q9BRZ2 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM56Q9BRZ2 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM56Q9BRZ2 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM56Q9BRZ2 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM56Q9BRZ2 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM56Q9BRZ2 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
TRIM56Q9BRZ2 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC16.59■□□□□ 0.25
TRIM56Q9BRZ2 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRIM56Q9BRZ2 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms