Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 DYRK1B-208ENST00000601972 772 ntTSL 2 BASIC15.73■□□□□ 0.11
VPS13AQ96RL7 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
VPS13AQ96RL7 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VPS13AQ96RL7 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VPS13AQ96RL7 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
VPS13AQ96RL7 RNF216P1-203ENST00000404404 2427 ntBASIC15.73■□□□□ 0.11
VPS13AQ96RL7 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
VPS13AQ96RL7 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VPS13AQ96RL7 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
VPS13AQ96RL7 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC15.73■□□□□ 0.11
VPS13AQ96RL7 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC15.73■□□□□ 0.11
VPS13AQ96RL7 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
VPS13AQ96RL7 TCL1B-201ENST00000340722 1166 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VPS13AQ96RL7 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VPS13AQ96RL7 MYL3-202ENST00000395869 1012 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VPS13AQ96RL7 PARVG-202ENST00000415224 999 ntTSL 2 BASIC15.73■□□□□ 0.11
VPS13AQ96RL7 TCERG1L-AS1-201ENST00000436942 472 ntTSL 2 BASIC15.73■□□□□ 0.11
VPS13AQ96RL7 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC15.73■□□□□ 0.11
VPS13AQ96RL7 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC15.73■□□□□ 0.11
VPS13AQ96RL7 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC15.73■□□□□ 0.11
VPS13AQ96RL7 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC15.73■□□□□ 0.11
VPS13AQ96RL7 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
VPS13AQ96RL7 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC15.73■□□□□ 0.11
VPS13AQ96RL7 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VPS13AQ96RL7 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
VPS13AQ96RL7 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC15.73■□□□□ 0.11
VPS13AQ96RL7 AC026904.3-201ENST00000636550 1530 ntTSL 5 BASIC15.73■□□□□ 0.11
VPS13AQ96RL7 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VPS13AQ96RL7 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VPS13AQ96RL7 DPM2-202ENST00000373110 738 ntTSL 2 BASIC15.73■□□□□ 0.11
VPS13AQ96RL7 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
VPS13AQ96RL7 CYP46A4P-201ENST00000414953 267 ntBASIC15.73■□□□□ 0.11
VPS13AQ96RL7 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
VPS13AQ96RL7 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
VPS13AQ96RL7 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
VPS13AQ96RL7 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VPS13AQ96RL7 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VPS13AQ96RL7 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
VPS13AQ96RL7 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VPS13AQ96RL7 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VPS13AQ96RL7 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
VPS13AQ96RL7 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VPS13AQ96RL7 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC15.72■□□□□ 0.11
VPS13AQ96RL7 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
VPS13AQ96RL7 KRT8P39-201ENST00000396270 1433 ntBASIC15.72■□□□□ 0.11
VPS13AQ96RL7 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC15.72■□□□□ 0.11
VPS13AQ96RL7 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
VPS13AQ96RL7 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VPS13AQ96RL7 GRN-214ENST00000589265 1632 ntTSL 5 BASIC15.72■□□□□ 0.11
VPS13AQ96RL7 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
VPS13AQ96RL7 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VPS13AQ96RL7 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
VPS13AQ96RL7 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC15.72■□□□□ 0.11
VPS13AQ96RL7 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VPS13AQ96RL7 CNR1-201ENST00000362094 1252 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
VPS13AQ96RL7 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
VPS13AQ96RL7 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
VPS13AQ96RL7 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC15.72■□□□□ 0.11
VPS13AQ96RL7 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
VPS13AQ96RL7 WDR7-208ENST00000589935 544 ntTSL 4 BASIC15.72■□□□□ 0.11
VPS13AQ96RL7 AC013467.2-201ENST00000605472 835 ntBASIC15.72■□□□□ 0.11
VPS13AQ96RL7 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
VPS13AQ96RL7 CDK7-214ENST00000626796 358 ntTSL 5 BASIC15.72■□□□□ 0.11
VPS13AQ96RL7 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC15.72■□□□□ 0.11
VPS13AQ96RL7 RERG-209ENST00000546331 1383 ntTSL 2 BASIC15.72■□□□□ 0.11
VPS13AQ96RL7 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VPS13AQ96RL7 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
VPS13AQ96RL7 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VPS13AQ96RL7 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
VPS13AQ96RL7 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC15.72■□□□□ 0.11
VPS13AQ96RL7 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VPS13AQ96RL7 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
VPS13AQ96RL7 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
VPS13AQ96RL7 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
VPS13AQ96RL7 STX1A-202ENST00000395154 1022 ntTSL 3 BASIC15.72■□□□□ 0.11
VPS13AQ96RL7 AC022137.2-201ENST00000503482 481 ntBASIC15.72■□□□□ 0.11
VPS13AQ96RL7 EIF3K-202ENST00000538434 966 ntTSL 2 BASIC15.72■□□□□ 0.11
VPS13AQ96RL7 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC15.72■□□□□ 0.11
VPS13AQ96RL7 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VPS13AQ96RL7 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VPS13AQ96RL7 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VPS13AQ96RL7 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VPS13AQ96RL7 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
VPS13AQ96RL7 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC15.71■□□□□ 0.11
VPS13AQ96RL7 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC15.71■□□□□ 0.11
VPS13AQ96RL7 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
VPS13AQ96RL7 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
VPS13AQ96RL7 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC15.71■□□□□ 0.11
VPS13AQ96RL7 AC125604.1-201ENST00000496255 707 ntBASIC15.71■□□□□ 0.11
VPS13AQ96RL7 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC15.71■□□□□ 0.11
VPS13AQ96RL7 UBXN1-214ENST00000533000 367 ntTSL 5 BASIC15.71■□□□□ 0.11
VPS13AQ96RL7 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC15.71■□□□□ 0.11
VPS13AQ96RL7 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC15.71■□□□□ 0.11
VPS13AQ96RL7 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
VPS13AQ96RL7 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
VPS13AQ96RL7 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC15.71■□□□□ 0.11
VPS13AQ96RL7 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
VPS13AQ96RL7 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
VPS13AQ96RL7 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
VPS13AQ96RL7 SYCN-201ENST00000318438 573 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms