Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
DEPDC4Q8N2C3 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
DEPDC4Q8N2C3 AC073347.1-201ENST00000421633 2643 ntBASIC15.21■□□□□ 0.03
DEPDC4Q8N2C3 AL671710.1-201ENST00000610245 2349 ntBASIC15.21■□□□□ 0.03
DEPDC4Q8N2C3 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
DEPDC4Q8N2C3 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC15.21■□□□□ 0.03
DEPDC4Q8N2C3 PMPCAP1-201ENST00000508114 1576 ntBASIC15.21■□□□□ 0.03
DEPDC4Q8N2C3 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC15.21■□□□□ 0.03
DEPDC4Q8N2C3 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC15.21■□□□□ 0.03
DEPDC4Q8N2C3 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC15.21■□□□□ 0.03
DEPDC4Q8N2C3 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC15.21■□□□□ 0.03
DEPDC4Q8N2C3 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
DEPDC4Q8N2C3 APOBEC3H-201ENST00000348946 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
DEPDC4Q8N2C3 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
DEPDC4Q8N2C3 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
DEPDC4Q8N2C3 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
DEPDC4Q8N2C3 TEX30-205ENST00000376029 959 ntTSL 2 BASIC15.21■□□□□ 0.03
DEPDC4Q8N2C3 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC15.21■□□□□ 0.03
DEPDC4Q8N2C3 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC15.21■□□□□ 0.03
DEPDC4Q8N2C3 AL020989.1-201ENST00000422979 469 ntBASIC15.21■□□□□ 0.03
DEPDC4Q8N2C3 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
DEPDC4Q8N2C3 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC15.21■□□□□ 0.03
DEPDC4Q8N2C3 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
DEPDC4Q8N2C3 AC018712.1-201ENST00000455767 687 ntBASIC15.21■□□□□ 0.03
DEPDC4Q8N2C3 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
DEPDC4Q8N2C3 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC15.21■□□□□ 0.03
DEPDC4Q8N2C3 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
DEPDC4Q8N2C3 SART3-203ENST00000546611 1184 ntBASIC15.21■□□□□ 0.03
DEPDC4Q8N2C3 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
DEPDC4Q8N2C3 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC15.21■□□□□ 0.03
DEPDC4Q8N2C3 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC15.21■□□□□ 0.03
DEPDC4Q8N2C3 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC15.21■□□□□ 0.03
DEPDC4Q8N2C3 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
DEPDC4Q8N2C3 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC15.21■□□□□ 0.03
DEPDC4Q8N2C3 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
DEPDC4Q8N2C3 CAND2-206ENST00000626378 333 ntTSL 5 BASIC15.21■□□□□ 0.03
DEPDC4Q8N2C3 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
DEPDC4Q8N2C3 ACE-203ENST00000413513 2237 ntTSL 2 BASIC15.21■□□□□ 0.03
DEPDC4Q8N2C3 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC15.21■□□□□ 0.03
DEPDC4Q8N2C3 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
DEPDC4Q8N2C3 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
DEPDC4Q8N2C3 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC15.21■□□□□ 0.03
DEPDC4Q8N2C3 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
DEPDC4Q8N2C3 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
DEPDC4Q8N2C3 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC15.21■□□□□ 0.02
DEPDC4Q8N2C3 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
DEPDC4Q8N2C3 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC15.21■□□□□ 0.02
DEPDC4Q8N2C3 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC15.21■□□□□ 0.02
DEPDC4Q8N2C3 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
DEPDC4Q8N2C3 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
DEPDC4Q8N2C3 AC079776.2-201ENST00000641154 1609 ntBASIC15.21■□□□□ 0.02
DEPDC4Q8N2C3 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.02
DEPDC4Q8N2C3 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.02
DEPDC4Q8N2C3 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
DEPDC4Q8N2C3 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC15.2■□□□□ 0.02
DEPDC4Q8N2C3 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC15.2■□□□□ 0.02
DEPDC4Q8N2C3 CDC14C-201ENST00000428251 1719 ntBASIC15.2■□□□□ 0.02
DEPDC4Q8N2C3 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC15.2■□□□□ 0.02
DEPDC4Q8N2C3 IL9RP2-201ENST00000423948 1312 ntBASIC15.2■□□□□ 0.02
DEPDC4Q8N2C3 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
DEPDC4Q8N2C3 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
DEPDC4Q8N2C3 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
DEPDC4Q8N2C3 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
DEPDC4Q8N2C3 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC15.2■□□□□ 0.02
DEPDC4Q8N2C3 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
DEPDC4Q8N2C3 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
DEPDC4Q8N2C3 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
DEPDC4Q8N2C3 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC15.2■□□□□ 0.02
DEPDC4Q8N2C3 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC15.2■□□□□ 0.02
DEPDC4Q8N2C3 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
DEPDC4Q8N2C3 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
DEPDC4Q8N2C3 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
DEPDC4Q8N2C3 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC15.2■□□□□ 0.02
DEPDC4Q8N2C3 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
DEPDC4Q8N2C3 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC15.2■□□□□ 0.02
DEPDC4Q8N2C3 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
DEPDC4Q8N2C3 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC15.2■□□□□ 0.02
DEPDC4Q8N2C3 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC15.2■□□□□ 0.02
DEPDC4Q8N2C3 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC15.2■□□□□ 0.02
DEPDC4Q8N2C3 PNMT-203ENST00000581428 677 ntTSL 2 BASIC15.2■□□□□ 0.02
DEPDC4Q8N2C3 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
DEPDC4Q8N2C3 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
DEPDC4Q8N2C3 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC15.2■□□□□ 0.02
DEPDC4Q8N2C3 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
DEPDC4Q8N2C3 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
DEPDC4Q8N2C3 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC15.2■□□□□ 0.02
DEPDC4Q8N2C3 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC15.2■□□□□ 0.02
DEPDC4Q8N2C3 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
DEPDC4Q8N2C3 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
DEPDC4Q8N2C3 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
DEPDC4Q8N2C3 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
DEPDC4Q8N2C3 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
DEPDC4Q8N2C3 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC15.2■□□□□ 0.02
DEPDC4Q8N2C3 ZNF259P1-201ENST00000407656 1365 ntBASIC15.2■□□□□ 0.02
DEPDC4Q8N2C3 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC15.2■□□□□ 0.02
DEPDC4Q8N2C3 LINC02447-202ENST00000501888 2146 ntBASIC15.2■□□□□ 0.02
DEPDC4Q8N2C3 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC15.2■□□□□ 0.02
DEPDC4Q8N2C3 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
DEPDC4Q8N2C3 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC15.2■□□□□ 0.02
DEPDC4Q8N2C3 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC15.2■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms