Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC18.03■□□□□ 0.48
CCDC65Q8IXS2 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC65Q8IXS2 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC18.02■□□□□ 0.48
CCDC65Q8IXS2 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC65Q8IXS2 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC65Q8IXS2 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC65Q8IXS2 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC18.02■□□□□ 0.48
CCDC65Q8IXS2 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC65Q8IXS2 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC65Q8IXS2 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC65Q8IXS2 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC18.02■□□□□ 0.48
CCDC65Q8IXS2 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC18.02■□□□□ 0.48
CCDC65Q8IXS2 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC18.02■□□□□ 0.48
CCDC65Q8IXS2 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
CCDC65Q8IXS2 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
CCDC65Q8IXS2 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC65Q8IXS2 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC65Q8IXS2 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC65Q8IXS2 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC65Q8IXS2 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
CCDC65Q8IXS2 PTMS-202ENST00000389462 773 ntTSL 2 BASIC18.02■□□□□ 0.48
CCDC65Q8IXS2 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC65Q8IXS2 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC65Q8IXS2 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
CCDC65Q8IXS2 COA5-202ENST00000409997 557 ntTSL 4 BASIC18.02■□□□□ 0.48
CCDC65Q8IXS2 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC18.02■□□□□ 0.48
CCDC65Q8IXS2 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
CCDC65Q8IXS2 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC18.02■□□□□ 0.48
CCDC65Q8IXS2 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC65Q8IXS2 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC65Q8IXS2 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC18.02■□□□□ 0.48
CCDC65Q8IXS2 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC18.02■□□□□ 0.48
CCDC65Q8IXS2 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC18.02■□□□□ 0.48
CCDC65Q8IXS2 MIR4469-201ENST00000583919 79 ntBASIC18.02■□□□□ 0.48
CCDC65Q8IXS2 SSH2-211ENST00000590153 570 ntTSL 4 BASIC18.02■□□□□ 0.48
CCDC65Q8IXS2 AC010327.4-202ENST00000591484 748 ntBASIC18.02■□□□□ 0.48
CCDC65Q8IXS2 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC18.02■□□□□ 0.48
CCDC65Q8IXS2 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC18.02■□□□□ 0.48
CCDC65Q8IXS2 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
CCDC65Q8IXS2 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.47
CCDC65Q8IXS2 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC18.02■□□□□ 0.47
CCDC65Q8IXS2 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC18.02■□□□□ 0.47
CCDC65Q8IXS2 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC18.02■□□□□ 0.47
CCDC65Q8IXS2 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC18.02■□□□□ 0.47
CCDC65Q8IXS2 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC18.02■□□□□ 0.47
CCDC65Q8IXS2 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC18.02■□□□□ 0.47
CCDC65Q8IXS2 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC18.02■□□□□ 0.47
CCDC65Q8IXS2 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.47
CCDC65Q8IXS2 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC18.02■□□□□ 0.47
CCDC65Q8IXS2 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
CCDC65Q8IXS2 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CCDC65Q8IXS2 AC010491.1-201ENST00000563101 2797 ntBASIC18.02■□□□□ 0.47
CCDC65Q8IXS2 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
CCDC65Q8IXS2 AC008894.3-201ENST00000624324 3103 ntBASIC18.01■□□□□ 0.47
CCDC65Q8IXS2 SUPT20HL2-201ENST00000486479 2409 ntBASIC18.01■□□□□ 0.47
CCDC65Q8IXS2 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC65Q8IXS2 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC65Q8IXS2 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC65Q8IXS2 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC65Q8IXS2 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
CCDC65Q8IXS2 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC18.01■□□□□ 0.47
CCDC65Q8IXS2 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC18.01■□□□□ 0.47
CCDC65Q8IXS2 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC65Q8IXS2 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC65Q8IXS2 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC18.01■□□□□ 0.47
CCDC65Q8IXS2 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC18.01■□□□□ 0.47
CCDC65Q8IXS2 GPX1P2-201ENST00000429271 606 ntBASIC18.01■□□□□ 0.47
CCDC65Q8IXS2 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC18.01■□□□□ 0.47
CCDC65Q8IXS2 AC112482.1-201ENST00000492080 688 ntBASIC18.01■□□□□ 0.47
CCDC65Q8IXS2 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC65Q8IXS2 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC65Q8IXS2 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC18.01■□□□□ 0.47
CCDC65Q8IXS2 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC18.01■□□□□ 0.47
CCDC65Q8IXS2 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC18.01■□□□□ 0.47
CCDC65Q8IXS2 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC65Q8IXS2 AC105339.1-204ENST00000636249 355 ntBASIC18.01■□□□□ 0.47
CCDC65Q8IXS2 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC18.01■□□□□ 0.47
CCDC65Q8IXS2 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC65Q8IXS2 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC65Q8IXS2 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC65Q8IXS2 UXT-AS1-201ENST00000590504 1525 ntBASIC18.01■□□□□ 0.47
CCDC65Q8IXS2 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
CCDC65Q8IXS2 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC18.01■□□□□ 0.47
CCDC65Q8IXS2 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC65Q8IXS2 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
CCDC65Q8IXS2 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC18.01■□□□□ 0.47
CCDC65Q8IXS2 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC18.01■□□□□ 0.47
CCDC65Q8IXS2 AC008741.2-201ENST00000612792 3115 ntBASIC18.01■□□□□ 0.47
CCDC65Q8IXS2 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC18■□□□□ 0.47
CCDC65Q8IXS2 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC65Q8IXS2 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC65Q8IXS2 AC008677.1-201ENST00000519230 1561 ntBASIC18■□□□□ 0.47
CCDC65Q8IXS2 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC18■□□□□ 0.47
CCDC65Q8IXS2 AC112504.1-201ENST00000623415 1841 ntBASIC18■□□□□ 0.47
CCDC65Q8IXS2 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC65Q8IXS2 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC18■□□□□ 0.47
CCDC65Q8IXS2 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC65Q8IXS2 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC18■□□□□ 0.47
CCDC65Q8IXS2 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC65Q8IXS2 AL139384.1-201ENST00000612143 3047 ntBASIC18■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms