Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC15.16■□□□□ 0.02
RFX4Q33E94 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC15.16■□□□□ 0.02
RFX4Q33E94 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC15.16■□□□□ 0.02
RFX4Q33E94 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
RFX4Q33E94 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RFX4Q33E94 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RFX4Q33E94 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC15.16■□□□□ 0.02
RFX4Q33E94 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RFX4Q33E94 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
RFX4Q33E94 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RFX4Q33E94 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
RFX4Q33E94 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
RFX4Q33E94 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC15.16■□□□□ 0.02
RFX4Q33E94 RNF146-204ENST00000476956 884 ntTSL 2 BASIC15.16■□□□□ 0.02
RFX4Q33E94 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC15.16■□□□□ 0.02
RFX4Q33E94 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC15.16■□□□□ 0.02
RFX4Q33E94 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
RFX4Q33E94 AC131009.4-201ENST00000624048 1740 ntBASIC15.16■□□□□ 0.02
RFX4Q33E94 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RFX4Q33E94 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
RFX4Q33E94 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
RFX4Q33E94 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC15.16■□□□□ 0.02
RFX4Q33E94 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
RFX4Q33E94 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC15.16■□□□□ 0.02
RFX4Q33E94 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RFX4Q33E94 OR2I1P-210ENST00000642037 4691 ntBASIC15.16■□□□□ 0.02
RFX4Q33E94 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RFX4Q33E94 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
RFX4Q33E94 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC15.15■□□□□ 0.02
RFX4Q33E94 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RFX4Q33E94 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC15.15■□□□□ 0.02
RFX4Q33E94 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC15.15■□□□□ 0.02
RFX4Q33E94 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RFX4Q33E94 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
RFX4Q33E94 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
RFX4Q33E94 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RFX4Q33E94 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RFX4Q33E94 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
RFX4Q33E94 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
RFX4Q33E94 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RFX4Q33E94 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
RFX4Q33E94 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC15.15■□□□□ 0.02
RFX4Q33E94 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RFX4Q33E94 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RFX4Q33E94 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RFX4Q33E94 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RFX4Q33E94 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
RFX4Q33E94 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RFX4Q33E94 FOSL1P1-201ENST00000511041 816 ntBASIC15.15■□□□□ 0.02
RFX4Q33E94 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC15.15■□□□□ 0.02
RFX4Q33E94 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RFX4Q33E94 AC139887.3-201ENST00000568585 713 ntBASIC15.15■□□□□ 0.02
RFX4Q33E94 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC15.15■□□□□ 0.02
RFX4Q33E94 MTDHP3-201ENST00000594186 672 ntBASIC15.15■□□□□ 0.02
RFX4Q33E94 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC15.15■□□□□ 0.02
RFX4Q33E94 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
RFX4Q33E94 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RFX4Q33E94 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RFX4Q33E94 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
RFX4Q33E94 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RFX4Q33E94 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
RFX4Q33E94 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RFX4Q33E94 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RFX4Q33E94 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RFX4Q33E94 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
RFX4Q33E94 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RFX4Q33E94 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RFX4Q33E94 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RFX4Q33E94 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
RFX4Q33E94 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
RFX4Q33E94 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
RFX4Q33E94 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC15.14■□□□□ 0.01
RFX4Q33E94 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC15.14■□□□□ 0.01
RFX4Q33E94 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
RFX4Q33E94 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
RFX4Q33E94 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC15.14■□□□□ 0.01
RFX4Q33E94 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
RFX4Q33E94 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
RFX4Q33E94 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC15.14■□□□□ 0.01
RFX4Q33E94 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
RFX4Q33E94 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
RFX4Q33E94 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC15.14■□□□□ 0.01
RFX4Q33E94 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
RFX4Q33E94 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
RFX4Q33E94 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
RFX4Q33E94 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC15.14■□□□□ 0.01
RFX4Q33E94 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC15.14■□□□□ 0.01
RFX4Q33E94 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
RFX4Q33E94 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
RFX4Q33E94 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
RFX4Q33E94 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
RFX4Q33E94 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
RFX4Q33E94 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
RFX4Q33E94 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
RFX4Q33E94 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC15.14■□□□□ 0.01
RFX4Q33E94 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC15.14■□□□□ 0.01
RFX4Q33E94 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC15.14■□□□□ 0.01
RFX4Q33E94 MIR1224-201ENST00000408193 85 ntBASIC15.14■□□□□ 0.01
RFX4Q33E94 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC15.14■□□□□ 0.01
RFX4Q33E94 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 63.2 ms