Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC15.02□□□□□ -0.01
RNF4P78317 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC15.02□□□□□ -0.01
RNF4P78317 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC15.02□□□□□ -0.01
RNF4P78317 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC15.02□□□□□ -0.01
RNF4P78317 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
RNF4P78317 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
RNF4P78317 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC15.02□□□□□ -0.01
RNF4P78317 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC15.02□□□□□ -0.01
RNF4P78317 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC15.02□□□□□ -0.01
RNF4P78317 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC15.02□□□□□ -0.01
RNF4P78317 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC15.02□□□□□ -0.01
RNF4P78317 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
RNF4P78317 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC15.02□□□□□ -0.01
RNF4P78317 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
RNF4P78317 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC15.02□□□□□ -0.01
RNF4P78317 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
RNF4P78317 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
RNF4P78317 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
RNF4P78317 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
RNF4P78317 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
RNF4P78317 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
RNF4P78317 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
RNF4P78317 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
RNF4P78317 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC15.01□□□□□ -0.01
RNF4P78317 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
RNF4P78317 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
RNF4P78317 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC15.01□□□□□ -0.01
RNF4P78317 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
RNF4P78317 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC15.01□□□□□ -0.01
RNF4P78317 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
RNF4P78317 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC15.01□□□□□ -0.01
RNF4P78317 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
RNF4P78317 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
RNF4P78317 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
RNF4P78317 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC15.01□□□□□ -0.01
RNF4P78317 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
RNF4P78317 TREML5P-201ENST00000421694 576 ntBASIC15.01□□□□□ -0.01
RNF4P78317 MTND6P24-201ENST00000440466 518 ntBASIC15.01□□□□□ -0.01
RNF4P78317 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
RNF4P78317 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
RNF4P78317 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
RNF4P78317 SATB1-217ENST00000493952 626 ntTSL 3 BASIC15.01□□□□□ -0.01
RNF4P78317 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
RNF4P78317 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC15.01□□□□□ -0.01
RNF4P78317 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC15.01□□□□□ -0.01
RNF4P78317 AL158211.3-201ENST00000607385 239 ntBASIC15.01□□□□□ -0.01
RNF4P78317 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC15.01□□□□□ -0.01
RNF4P78317 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC15.01□□□□□ -0.01
RNF4P78317 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
RNF4P78317 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
RNF4P78317 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
RNF4P78317 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
RNF4P78317 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC15.01□□□□□ -0.01
RNF4P78317 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC15.01□□□□□ -0.01
RNF4P78317 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC15.01□□□□□ -0.01
RNF4P78317 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
RNF4P78317 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
RNF4P78317 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
RNF4P78317 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
RNF4P78317 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
RNF4P78317 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
RNF4P78317 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
RNF4P78317 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC15□□□□□ -0.01
RNF4P78317 FO538757.1-201ENST00000623083 1397 ntBASIC15□□□□□ -0.01
RNF4P78317 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC15□□□□□ -0.01
RNF4P78317 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
RNF4P78317 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
RNF4P78317 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
RNF4P78317 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
RNF4P78317 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
RNF4P78317 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
RNF4P78317 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
RNF4P78317 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC15□□□□□ -0.01
RNF4P78317 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
RNF4P78317 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
RNF4P78317 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC15□□□□□ -0.01
RNF4P78317 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC15□□□□□ -0.01
RNF4P78317 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC15□□□□□ -0.01
RNF4P78317 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC15□□□□□ -0.01
RNF4P78317 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC15□□□□□ -0.01
RNF4P78317 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC15□□□□□ -0.01
RNF4P78317 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC15□□□□□ -0.01
RNF4P78317 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC15□□□□□ -0.01
RNF4P78317 AC055876.3-201ENST00000431496 288 ntBASIC15□□□□□ -0.01
RNF4P78317 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC15□□□□□ -0.01
RNF4P78317 AC245100.5-201ENST00000452108 331 ntBASIC15□□□□□ -0.01
RNF4P78317 AL139010.1-201ENST00000454878 894 ntBASIC15□□□□□ -0.01
RNF4P78317 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC15□□□□□ -0.01
RNF4P78317 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC15□□□□□ -0.01
RNF4P78317 AC138649.4-201ENST00000612222 287 ntBASIC15□□□□□ -0.01
RNF4P78317 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC15□□□□□ -0.01
RNF4P78317 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
RNF4P78317 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC15□□□□□ -0.01
RNF4P78317 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
RNF4P78317 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
RNF4P78317 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
RNF4P78317 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC15□□□□□ -0.01
RNF4P78317 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
RNF4P78317 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC15□□□□□ -0.01
RNF4P78317 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC15□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms