Protein–RNA interactions for Protein: P56747

CLDN6, Claudin-6, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN6P56747 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CLDN6P56747 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
CLDN6P56747 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
CLDN6P56747 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.07
CLDN6P56747 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
CLDN6P56747 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC15.52■□□□□ 0.07
CLDN6P56747 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC15.52■□□□□ 0.07
CLDN6P56747 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
CLDN6P56747 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
CLDN6P56747 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
CLDN6P56747 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
CLDN6P56747 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
CLDN6P56747 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
CLDN6P56747 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC15.52■□□□□ 0.07
CLDN6P56747 AL645728.1-201ENST00000366221 2101 ntBASIC15.52■□□□□ 0.07
CLDN6P56747 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC15.52■□□□□ 0.07
CLDN6P56747 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
CLDN6P56747 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CLDN6P56747 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
CLDN6P56747 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CLDN6P56747 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CLDN6P56747 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CLDN6P56747 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
CLDN6P56747 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
CLDN6P56747 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
CLDN6P56747 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
CLDN6P56747 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
CLDN6P56747 AC093525.8-201ENST00000624099 1342 ntBASIC15.51■□□□□ 0.07
CLDN6P56747 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CLDN6P56747 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
CLDN6P56747 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC15.51■□□□□ 0.07
CLDN6P56747 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
CLDN6P56747 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
CLDN6P56747 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CLDN6P56747 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
CLDN6P56747 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CLDN6P56747 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC15.51■□□□□ 0.07
CLDN6P56747 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CLDN6P56747 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC15.51■□□□□ 0.07
CLDN6P56747 CTBP2P5-201ENST00000454986 1264 ntBASIC15.51■□□□□ 0.07
CLDN6P56747 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CLDN6P56747 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CLDN6P56747 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC15.51■□□□□ 0.07
CLDN6P56747 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC15.51■□□□□ 0.07
CLDN6P56747 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
CLDN6P56747 AC026979.3-201ENST00000607315 403 ntBASIC15.51■□□□□ 0.07
CLDN6P56747 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
CLDN6P56747 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CLDN6P56747 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CLDN6P56747 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
CLDN6P56747 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
CLDN6P56747 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC15.51■□□□□ 0.07
CLDN6P56747 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
CLDN6P56747 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC15.51■□□□□ 0.07
CLDN6P56747 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC15.51■□□□□ 0.07
CLDN6P56747 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CLDN6P56747 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC15.51■□□□□ 0.07
CLDN6P56747 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
CLDN6P56747 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC15.51■□□□□ 0.07
CLDN6P56747 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CLDN6P56747 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CLDN6P56747 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC15.5■□□□□ 0.07
CLDN6P56747 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
CLDN6P56747 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC15.5■□□□□ 0.07
CLDN6P56747 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
CLDN6P56747 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC15.5■□□□□ 0.07
CLDN6P56747 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CLDN6P56747 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CLDN6P56747 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC15.5■□□□□ 0.07
CLDN6P56747 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
CLDN6P56747 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CLDN6P56747 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CLDN6P56747 PDIA3P1-201ENST00000471856 1510 ntBASIC15.5■□□□□ 0.07
CLDN6P56747 AL133338.1-201ENST00000565695 1517 ntBASIC15.5■□□□□ 0.07
CLDN6P56747 RELA-227ENST00000615805 2236 ntTSL 5 BASIC15.5■□□□□ 0.07
CLDN6P56747 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
CLDN6P56747 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC15.5■□□□□ 0.07
CLDN6P56747 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CLDN6P56747 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
CLDN6P56747 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
CLDN6P56747 MIR1908-201ENST00000410394 80 ntBASIC15.5■□□□□ 0.07
CLDN6P56747 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CLDN6P56747 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC15.5■□□□□ 0.07
CLDN6P56747 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
CLDN6P56747 ACTBP11-201ENST00000436287 1126 ntBASIC15.5■□□□□ 0.07
CLDN6P56747 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC15.5■□□□□ 0.07
CLDN6P56747 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC15.5■□□□□ 0.07
CLDN6P56747 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CLDN6P56747 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CLDN6P56747 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC15.5■□□□□ 0.07
CLDN6P56747 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC15.5■□□□□ 0.07
CLDN6P56747 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC15.5■□□□□ 0.07
CLDN6P56747 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC15.5■□□□□ 0.07
CLDN6P56747 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CLDN6P56747 AC025048.3-201ENST00000590609 569 ntBASIC15.5■□□□□ 0.07
CLDN6P56747 BTNL10-201ENST00000595971 695 ntBASIC15.5■□□□□ 0.07
CLDN6P56747 TMEM261P1-201ENST00000604899 340 ntBASIC15.5■□□□□ 0.07
CLDN6P56747 AC005702.4-201ENST00000618393 416 ntBASIC15.5■□□□□ 0.07
CLDN6P56747 AL136982.4-201ENST00000437689 1740 ntBASIC15.5■□□□□ 0.07
CLDN6P56747 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms