Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.27
NEK3P51956 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.27
NEK3P51956 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
NEK3P51956 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.27
NEK3P51956 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC16.76■□□□□ 0.27
NEK3P51956 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
NEK3P51956 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
NEK3P51956 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
NEK3P51956 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
NEK3P51956 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
NEK3P51956 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
NEK3P51956 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
NEK3P51956 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC16.76■□□□□ 0.27
NEK3P51956 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
NEK3P51956 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC16.76■□□□□ 0.27
NEK3P51956 BSG-215ENST00000618006 1329 ntTSL 2 BASIC16.76■□□□□ 0.27
NEK3P51956 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
NEK3P51956 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
NEK3P51956 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
NEK3P51956 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
NEK3P51956 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
NEK3P51956 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
NEK3P51956 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
NEK3P51956 HLA-DQB2-231ENST00000435145 2026 ntBASIC16.76■□□□□ 0.27
NEK3P51956 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
NEK3P51956 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
NEK3P51956 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
NEK3P51956 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
NEK3P51956 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
NEK3P51956 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC16.76■□□□□ 0.27
NEK3P51956 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC16.76■□□□□ 0.27
NEK3P51956 CBR1-202ENST00000399191 838 ntTSL 3 BASIC16.76■□□□□ 0.27
NEK3P51956 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC16.76■□□□□ 0.27
NEK3P51956 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC16.76■□□□□ 0.27
NEK3P51956 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC16.76■□□□□ 0.27
NEK3P51956 WDR53-204ENST00000433160 887 ntTSL 5 BASIC16.76■□□□□ 0.27
NEK3P51956 SPCS2P4-201ENST00000436160 681 ntBASIC16.76■□□□□ 0.27
NEK3P51956 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC16.76■□□□□ 0.27
NEK3P51956 IGHV3-62-201ENST00000520057 340 ntBASIC16.76■□□□□ 0.27
NEK3P51956 DAD1-205ENST00000543337 501 ntTSL 3 BASIC16.76■□□□□ 0.27
NEK3P51956 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
NEK3P51956 AC004449.1-201ENST00000564240 433 ntBASIC16.76■□□□□ 0.27
NEK3P51956 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC16.76■□□□□ 0.27
NEK3P51956 AC009093.7-201ENST00000623853 1223 ntBASIC16.76■□□□□ 0.27
NEK3P51956 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
NEK3P51956 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
NEK3P51956 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
NEK3P51956 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
NEK3P51956 SNX33P1-201ENST00000592116 1762 ntBASIC16.76■□□□□ 0.27
NEK3P51956 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
NEK3P51956 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
NEK3P51956 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
NEK3P51956 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
NEK3P51956 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
NEK3P51956 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
NEK3P51956 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
NEK3P51956 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC16.76■□□□□ 0.27
NEK3P51956 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
NEK3P51956 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC16.75■□□□□ 0.27
NEK3P51956 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
NEK3P51956 AC016027.1-202ENST00000607927 1699 ntBASIC16.75■□□□□ 0.27
NEK3P51956 FER1L4-210ENST00000615531 5998 ntBASIC16.75■□□□□ 0.27
NEK3P51956 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
NEK3P51956 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC16.75■□□□□ 0.27
NEK3P51956 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
NEK3P51956 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
NEK3P51956 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC16.75■□□□□ 0.27
NEK3P51956 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC16.75■□□□□ 0.27
NEK3P51956 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
NEK3P51956 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
NEK3P51956 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC16.75■□□□□ 0.27
NEK3P51956 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
NEK3P51956 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
NEK3P51956 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
NEK3P51956 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
NEK3P51956 AL139400.1-201ENST00000366220 510 ntBASIC16.75■□□□□ 0.27
NEK3P51956 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC16.75■□□□□ 0.27
NEK3P51956 KRT18P32-201ENST00000424695 1287 ntBASIC16.75■□□□□ 0.27
NEK3P51956 AL645939.2-201ENST00000427340 991 ntBASIC16.75■□□□□ 0.27
NEK3P51956 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC16.75■□□□□ 0.27
NEK3P51956 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
NEK3P51956 AC069335.1-201ENST00000489972 472 ntBASIC16.75■□□□□ 0.27
NEK3P51956 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC16.75■□□□□ 0.27
NEK3P51956 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC16.75■□□□□ 0.27
NEK3P51956 AC093520.2-201ENST00000561830 333 ntBASIC16.75■□□□□ 0.27
NEK3P51956 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC16.75■□□□□ 0.27
NEK3P51956 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC16.75■□□□□ 0.27
NEK3P51956 AC093028.1-201ENST00000622998 982 ntBASIC16.75■□□□□ 0.27
NEK3P51956 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
NEK3P51956 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC16.75■□□□□ 0.27
NEK3P51956 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC16.75■□□□□ 0.27
NEK3P51956 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC16.75■□□□□ 0.27
NEK3P51956 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
NEK3P51956 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC16.75■□□□□ 0.27
NEK3P51956 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC16.75■□□□□ 0.27
NEK3P51956 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
NEK3P51956 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC16.75■□□□□ 0.27
NEK3P51956 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC16.75■□□□□ 0.27
NEK3P51956 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
NEK3P51956 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC16.75■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 67.6 ms