Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HMGB1P09429 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC19.12■□□□□ 0.65
HMGB1P09429 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HMGB1P09429 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HMGB1P09429 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC19.12■□□□□ 0.65
HMGB1P09429 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HMGB1P09429 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HMGB1P09429 UXT-AS1-201ENST00000590504 1525 ntBASIC19.12■□□□□ 0.65
HMGB1P09429 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC19.12■□□□□ 0.65
HMGB1P09429 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
HMGB1P09429 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC19.12■□□□□ 0.65
HMGB1P09429 BX842568.4-201ENST00000421222 227 ntBASIC19.12■□□□□ 0.65
HMGB1P09429 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC19.12■□□□□ 0.65
HMGB1P09429 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC19.12■□□□□ 0.65
HMGB1P09429 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC19.12■□□□□ 0.65
HMGB1P09429 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC19.12■□□□□ 0.65
HMGB1P09429 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC19.12■□□□□ 0.65
HMGB1P09429 AC243562.2-201ENST00000561247 970 ntBASIC19.12■□□□□ 0.65
HMGB1P09429 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC19.12■□□□□ 0.65
HMGB1P09429 MIR4469-201ENST00000583919 79 ntBASIC19.12■□□□□ 0.65
HMGB1P09429 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC19.12■□□□□ 0.65
HMGB1P09429 AC022145.2-201ENST00000598203 171 ntBASIC19.12■□□□□ 0.65
HMGB1P09429 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC19.12■□□□□ 0.65
HMGB1P09429 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
HMGB1P09429 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
HMGB1P09429 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
HMGB1P09429 AL513210.1-201ENST00000629608 234 ntBASIC19.12■□□□□ 0.65
HMGB1P09429 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HMGB1P09429 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
HMGB1P09429 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC19.12■□□□□ 0.65
HMGB1P09429 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
HMGB1P09429 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
HMGB1P09429 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HMGB1P09429 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
HMGB1P09429 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC19.12■□□□□ 0.65
HMGB1P09429 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
HMGB1P09429 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
HMGB1P09429 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HMGB1P09429 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HMGB1P09429 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HMGB1P09429 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HMGB1P09429 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
HMGB1P09429 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
HMGB1P09429 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
HMGB1P09429 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC19.11■□□□□ 0.65
HMGB1P09429 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HMGB1P09429 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HMGB1P09429 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
HMGB1P09429 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HMGB1P09429 STOM-202ENST00000347359 870 ntTSL 2 BASIC19.11■□□□□ 0.65
HMGB1P09429 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC19.11■□□□□ 0.65
HMGB1P09429 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
HMGB1P09429 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC19.11■□□□□ 0.65
HMGB1P09429 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC19.11■□□□□ 0.65
HMGB1P09429 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HMGB1P09429 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC19.11■□□□□ 0.65
HMGB1P09429 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC19.11■□□□□ 0.65
HMGB1P09429 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
HMGB1P09429 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HMGB1P09429 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HMGB1P09429 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
HMGB1P09429 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HMGB1P09429 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC19.11■□□□□ 0.65
HMGB1P09429 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HMGB1P09429 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HMGB1P09429 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HMGB1P09429 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
HMGB1P09429 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC19.11■□□□□ 0.65
HMGB1P09429 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HMGB1P09429 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC19.11■□□□□ 0.65
HMGB1P09429 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HMGB1P09429 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC19.11■□□□□ 0.65
HMGB1P09429 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC19.11■□□□□ 0.65
HMGB1P09429 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HMGB1P09429 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HMGB1P09429 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
HMGB1P09429 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
HMGB1P09429 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HMGB1P09429 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
HMGB1P09429 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
HMGB1P09429 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HMGB1P09429 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC19.1■□□□□ 0.65
HMGB1P09429 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
HMGB1P09429 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HMGB1P09429 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HMGB1P09429 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
HMGB1P09429 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HMGB1P09429 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HMGB1P09429 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HMGB1P09429 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC19.1■□□□□ 0.65
HMGB1P09429 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
HMGB1P09429 RPSAP43-201ENST00000402237 625 ntBASIC19.1■□□□□ 0.65
HMGB1P09429 UPF3AP3-201ENST00000420996 769 ntBASIC19.1■□□□□ 0.65
HMGB1P09429 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC19.1■□□□□ 0.65
HMGB1P09429 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC19.1■□□□□ 0.65
HMGB1P09429 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC19.1■□□□□ 0.65
HMGB1P09429 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC19.1■□□□□ 0.65
HMGB1P09429 AC112482.1-201ENST00000492080 688 ntBASIC19.1■□□□□ 0.65
HMGB1P09429 SLC25A39P2-201ENST00000537614 270 ntBASIC19.1■□□□□ 0.65
HMGB1P09429 TSFM-210ENST00000550559 897 ntTSL 5 BASIC19.1■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms