Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CTDNEP1O95476 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CTDNEP1O95476 FES-204ENST00000414248 2327 ntTSL 2 BASIC18.72■□□□□ 0.59
CTDNEP1O95476 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
CTDNEP1O95476 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC18.72■□□□□ 0.59
CTDNEP1O95476 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
CTDNEP1O95476 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC18.72■□□□□ 0.59
CTDNEP1O95476 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CTDNEP1O95476 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC18.72■□□□□ 0.59
CTDNEP1O95476 AC013268.4-201ENST00000637413 2228 ntBASIC18.72■□□□□ 0.59
CTDNEP1O95476 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC18.72■□□□□ 0.59
CTDNEP1O95476 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
CTDNEP1O95476 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC18.72■□□□□ 0.59
CTDNEP1O95476 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC18.72■□□□□ 0.59
CTDNEP1O95476 DNAJB3-201ENST00000446806 729 ntBASIC18.72■□□□□ 0.59
CTDNEP1O95476 CCDC74BP1-201ENST00000508880 1123 ntBASIC18.72■□□□□ 0.59
CTDNEP1O95476 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC18.72■□□□□ 0.59
CTDNEP1O95476 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC18.72■□□□□ 0.59
CTDNEP1O95476 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CTDNEP1O95476 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC18.72■□□□□ 0.59
CTDNEP1O95476 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC18.72■□□□□ 0.59
CTDNEP1O95476 BANF1P1-201ENST00000553684 263 ntBASIC18.72■□□□□ 0.59
CTDNEP1O95476 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC18.72■□□□□ 0.59
CTDNEP1O95476 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CTDNEP1O95476 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CTDNEP1O95476 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
CTDNEP1O95476 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CTDNEP1O95476 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC18.72■□□□□ 0.59
CTDNEP1O95476 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CTDNEP1O95476 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CTDNEP1O95476 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC18.72■□□□□ 0.59
CTDNEP1O95476 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC18.72■□□□□ 0.59
CTDNEP1O95476 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CTDNEP1O95476 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC18.71■□□□□ 0.59
CTDNEP1O95476 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC18.71■□□□□ 0.59
CTDNEP1O95476 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CTDNEP1O95476 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CTDNEP1O95476 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CTDNEP1O95476 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
CTDNEP1O95476 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CTDNEP1O95476 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
CTDNEP1O95476 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC18.71■□□□□ 0.59
CTDNEP1O95476 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
CTDNEP1O95476 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC18.71■□□□□ 0.59
CTDNEP1O95476 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CTDNEP1O95476 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC18.71■□□□□ 0.59
CTDNEP1O95476 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CTDNEP1O95476 AC138932.1-201ENST00000534164 6830 ntBASIC18.71■□□□□ 0.59
CTDNEP1O95476 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CTDNEP1O95476 ZBTB45P2-201ENST00000452245 1531 ntBASIC18.71■□□□□ 0.59
CTDNEP1O95476 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC18.71■□□□□ 0.59
CTDNEP1O95476 DKFZP434H168-201ENST00000567381 1905 ntBASIC18.71■□□□□ 0.59
CTDNEP1O95476 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC18.71■□□□□ 0.59
CTDNEP1O95476 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CTDNEP1O95476 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
CTDNEP1O95476 COA5-202ENST00000409997 557 ntTSL 4 BASIC18.71■□□□□ 0.59
CTDNEP1O95476 UPF3AP3-201ENST00000420996 769 ntBASIC18.71■□□□□ 0.59
CTDNEP1O95476 BX842568.4-201ENST00000421222 227 ntBASIC18.71■□□□□ 0.59
CTDNEP1O95476 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC18.71■□□□□ 0.59
CTDNEP1O95476 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CTDNEP1O95476 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC18.71■□□□□ 0.59
CTDNEP1O95476 RARRES2P9-201ENST00000565168 469 ntBASIC18.71■□□□□ 0.59
CTDNEP1O95476 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CTDNEP1O95476 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC18.71■□□□□ 0.59
CTDNEP1O95476 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CTDNEP1O95476 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CTDNEP1O95476 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
CTDNEP1O95476 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CTDNEP1O95476 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC18.71■□□□□ 0.59
CTDNEP1O95476 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CTDNEP1O95476 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CTDNEP1O95476 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
CTDNEP1O95476 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
CTDNEP1O95476 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC18.71■□□□□ 0.58
CTDNEP1O95476 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC18.7■□□□□ 0.58
CTDNEP1O95476 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CTDNEP1O95476 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CTDNEP1O95476 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
CTDNEP1O95476 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC18.7■□□□□ 0.58
CTDNEP1O95476 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC18.7■□□□□ 0.58
CTDNEP1O95476 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CTDNEP1O95476 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
CTDNEP1O95476 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CTDNEP1O95476 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CTDNEP1O95476 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CTDNEP1O95476 AL627223.1-201ENST00000416693 442 ntBASIC18.7■□□□□ 0.58
CTDNEP1O95476 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
CTDNEP1O95476 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC18.7■□□□□ 0.58
CTDNEP1O95476 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CTDNEP1O95476 MDH2-205ENST00000461263 648 ntTSL 2 BASIC18.7■□□□□ 0.58
CTDNEP1O95476 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CTDNEP1O95476 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CTDNEP1O95476 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CTDNEP1O95476 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC18.7■□□□□ 0.58
CTDNEP1O95476 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC18.7■□□□□ 0.58
CTDNEP1O95476 HR-201ENST00000312841 5351 ntTSL 5 BASIC18.7■□□□□ 0.58
CTDNEP1O95476 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CTDNEP1O95476 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
CTDNEP1O95476 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CTDNEP1O95476 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 61.4 ms