Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC18.88■□□□□ 0.61
CDKL5O76039 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC18.88■□□□□ 0.61
CDKL5O76039 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
CDKL5O76039 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CDKL5O76039 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
CDKL5O76039 ACE-203ENST00000413513 2237 ntTSL 2 BASIC18.88■□□□□ 0.61
CDKL5O76039 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CDKL5O76039 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CDKL5O76039 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC18.88■□□□□ 0.61
CDKL5O76039 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC18.88■□□□□ 0.61
CDKL5O76039 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
CDKL5O76039 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC18.87■□□□□ 0.61
CDKL5O76039 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CDKL5O76039 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
CDKL5O76039 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CDKL5O76039 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CDKL5O76039 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC18.87■□□□□ 0.61
CDKL5O76039 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC18.87■□□□□ 0.61
CDKL5O76039 PTMS-202ENST00000389462 773 ntTSL 2 BASIC18.87■□□□□ 0.61
CDKL5O76039 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC18.87■□□□□ 0.61
CDKL5O76039 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
CDKL5O76039 CEND1P1-201ENST00000451006 455 ntBASIC18.87■□□□□ 0.61
CDKL5O76039 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
CDKL5O76039 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC18.87■□□□□ 0.61
CDKL5O76039 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
CDKL5O76039 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC18.87■□□□□ 0.61
CDKL5O76039 AP001282.1-201ENST00000531301 1499 ntBASIC18.87■□□□□ 0.61
CDKL5O76039 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CDKL5O76039 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
CDKL5O76039 LINC01225-203ENST00000563550 1244 ntBASIC18.87■□□□□ 0.61
CDKL5O76039 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC18.87■□□□□ 0.61
CDKL5O76039 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
CDKL5O76039 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC18.87■□□□□ 0.61
CDKL5O76039 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
CDKL5O76039 AL139384.1-201ENST00000612143 3047 ntBASIC18.87■□□□□ 0.61
CDKL5O76039 AC007950.2-201ENST00000615045 2347 ntBASIC18.86■□□□□ 0.61
CDKL5O76039 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CDKL5O76039 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC18.86■□□□□ 0.61
CDKL5O76039 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC18.86■□□□□ 0.61
CDKL5O76039 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC18.86■□□□□ 0.61
CDKL5O76039 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC18.86■□□□□ 0.61
CDKL5O76039 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CDKL5O76039 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
CDKL5O76039 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CDKL5O76039 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC18.86■□□□□ 0.61
CDKL5O76039 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC18.86■□□□□ 0.61
CDKL5O76039 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CDKL5O76039 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
CDKL5O76039 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CDKL5O76039 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
CDKL5O76039 FAM220BP-201ENST00000377689 816 ntBASIC18.86■□□□□ 0.61
CDKL5O76039 GPX1P2-201ENST00000429271 606 ntBASIC18.86■□□□□ 0.61
CDKL5O76039 PUS1-205ENST00000535067 838 ntTSL 3 BASIC18.86■□□□□ 0.61
CDKL5O76039 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CDKL5O76039 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC18.86■□□□□ 0.61
CDKL5O76039 MIR3687-2-201ENST00000577708 61 ntBASIC18.86■□□□□ 0.61
CDKL5O76039 AC061975.2-201ENST00000581722 295 ntBASIC18.86■□□□□ 0.61
CDKL5O76039 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC18.86■□□□□ 0.61
CDKL5O76039 MIR3687-1-201ENST00000614492 61 ntBASIC18.86■□□□□ 0.61
CDKL5O76039 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC18.86■□□□□ 0.61
CDKL5O76039 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CDKL5O76039 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CDKL5O76039 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
CDKL5O76039 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CDKL5O76039 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC18.86■□□□□ 0.61
CDKL5O76039 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
CDKL5O76039 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC18.86■□□□□ 0.61
CDKL5O76039 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CDKL5O76039 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CDKL5O76039 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
CDKL5O76039 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC18.86■□□□□ 0.61
CDKL5O76039 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC18.86■□□□□ 0.61
CDKL5O76039 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC18.86■□□□□ 0.61
CDKL5O76039 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC18.86■□□□□ 0.61
CDKL5O76039 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC18.86■□□□□ 0.61
CDKL5O76039 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC18.86■□□□□ 0.61
CDKL5O76039 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC18.85■□□□□ 0.61
CDKL5O76039 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC18.85■□□□□ 0.61
CDKL5O76039 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CDKL5O76039 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
CDKL5O76039 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC18.85■□□□□ 0.61
CDKL5O76039 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC18.85■□□□□ 0.61
CDKL5O76039 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
CDKL5O76039 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC18.85■□□□□ 0.61
CDKL5O76039 HLA-H-201ENST00000383620 1096 ntBASIC18.85■□□□□ 0.61
CDKL5O76039 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC18.85■□□□□ 0.61
CDKL5O76039 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CDKL5O76039 BX842568.4-201ENST00000421222 227 ntBASIC18.85■□□□□ 0.61
CDKL5O76039 AL592309.1-201ENST00000443127 649 ntBASIC18.85■□□□□ 0.61
CDKL5O76039 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC18.85■□□□□ 0.61
CDKL5O76039 YBX1P5-201ENST00000509441 847 ntBASIC18.85■□□□□ 0.61
CDKL5O76039 RNA5SP410-201ENST00000516285 106 ntBASIC18.85■□□□□ 0.61
CDKL5O76039 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC18.85■□□□□ 0.61
CDKL5O76039 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC18.85■□□□□ 0.61
CDKL5O76039 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CDKL5O76039 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
CDKL5O76039 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
CDKL5O76039 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC18.85■□□□□ 0.61
CDKL5O76039 AC084121.4-201ENST00000641598 221 ntBASIC18.85■□□□□ 0.61
CDKL5O76039 AF228730.8-201ENST00000642140 221 ntBASIC18.85■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 50.9 ms