Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC27.18■■□□□ 1.94
CUX2O14529 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
CUX2O14529 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC27.18■■□□□ 1.94
CUX2O14529 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
CUX2O14529 SERF2-201ENST00000249786 1537 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
CUX2O14529 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC27.18■■□□□ 1.94
CUX2O14529 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC27.18■■□□□ 1.94
CUX2O14529 AL512652.2-201ENST00000625156 1716 ntBASIC27.18■■□□□ 1.94
CUX2O14529 AC134043.2-201ENST00000624206 2238 ntBASIC27.18■■□□□ 1.94
CUX2O14529 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
CUX2O14529 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC27.18■■□□□ 1.94
CUX2O14529 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC27.18■■□□□ 1.94
CUX2O14529 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC27.18■■□□□ 1.94
CUX2O14529 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
CUX2O14529 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC27.18■■□□□ 1.94
CUX2O14529 EEF1DP4-201ENST00000446006 880 ntBASIC27.18■■□□□ 1.94
CUX2O14529 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC27.18■■□□□ 1.94
CUX2O14529 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC27.18■■□□□ 1.94
CUX2O14529 PRMT5-AS1-206ENST00000599580 847 ntTSL 5 BASIC27.18■■□□□ 1.94
CUX2O14529 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC27.18■■□□□ 1.94
CUX2O14529 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
CUX2O14529 AL390961.4-201ENST00000623958 2535 ntBASIC27.18■■□□□ 1.94
CUX2O14529 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC27.18■■□□□ 1.94
CUX2O14529 AC092068.3-201ENST00000587894 2016 ntBASIC27.17■■□□□ 1.94
CUX2O14529 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC27.17■■□□□ 1.94
CUX2O14529 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
CUX2O14529 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC27.17■■□□□ 1.94
CUX2O14529 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
CUX2O14529 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC27.17■■□□□ 1.94
CUX2O14529 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC27.17■■□□□ 1.94
CUX2O14529 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
CUX2O14529 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC27.17■■□□□ 1.94
CUX2O14529 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC27.17■■□□□ 1.94
CUX2O14529 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC27.17■■□□□ 1.94
CUX2O14529 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC27.17■■□□□ 1.94
CUX2O14529 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
CUX2O14529 MUC1-203ENST00000342482 537 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
CUX2O14529 SMS-201ENST00000379404 1174 ntTSL 3 BASIC27.17■■□□□ 1.94
CUX2O14529 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC27.17■■□□□ 1.94
CUX2O14529 CENPX-208ENST00000584347 799 ntTSL 2 BASIC27.17■■□□□ 1.94
CUX2O14529 ZNF790-AS1-203ENST00000588906 850 ntTSL 2 BASIC27.17■■□□□ 1.94
CUX2O14529 RNASEK-210ENST00000593646 566 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
CUX2O14529 AC127024.7-201ENST00000625101 200 ntBASIC27.17■■□□□ 1.94
CUX2O14529 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
CUX2O14529 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC27.17■■□□□ 1.94
CUX2O14529 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
CUX2O14529 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
CUX2O14529 FST-202ENST00000396947 2538 ntTSL 5 BASIC27.17■■□□□ 1.94
CUX2O14529 AL023775.1-201ENST00000454907 1746 ntBASIC27.17■■□□□ 1.94
CUX2O14529 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
CUX2O14529 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC27.17■■□□□ 1.94
CUX2O14529 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC27.16■■□□□ 1.94
CUX2O14529 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC27.16■■□□□ 1.94
CUX2O14529 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
CUX2O14529 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
CUX2O14529 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
CUX2O14529 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
CUX2O14529 AC091179.2-201ENST00000495536 532 ntTSL 3 BASIC27.16■■□□□ 1.94
CUX2O14529 IGHV3-37-201ENST00000518544 340 ntBASIC27.16■■□□□ 1.94
CUX2O14529 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC27.16■■□□□ 1.94
CUX2O14529 AC018761.2-201ENST00000585496 296 ntTSL 3 BASIC27.16■■□□□ 1.94
CUX2O14529 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC27.16■■□□□ 1.94
CUX2O14529 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
CUX2O14529 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC27.16■■□□□ 1.94
CUX2O14529 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
CUX2O14529 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC27.15■■□□□ 1.94
CUX2O14529 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
CUX2O14529 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC27.15■■□□□ 1.94
CUX2O14529 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC27.15■■□□□ 1.94
CUX2O14529 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC27.15■■□□□ 1.94
CUX2O14529 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC27.15■■□□□ 1.94
CUX2O14529 PGAP2-208ENST00000464229 863 ntTSL 3 BASIC27.15■■□□□ 1.94
CUX2O14529 FXR1-221ENST00000491674 365 ntTSL 2 BASIC27.15■■□□□ 1.94
CUX2O14529 RPS25-202ENST00000527673 835 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
CUX2O14529 AC093567.1-201ENST00000590649 877 ntTSL 3 BASIC27.15■■□□□ 1.94
CUX2O14529 SLC27A5-204ENST00000594786 643 ntTSL 2 BASIC27.15■■□□□ 1.94
CUX2O14529 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC27.15■■□□□ 1.94
CUX2O14529 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
CUX2O14529 CFAP36-201ENST00000339012 1373 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
CUX2O14529 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
CUX2O14529 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
CUX2O14529 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC27.15■■□□□ 1.94
CUX2O14529 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
CUX2O14529 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC27.14■■□□□ 1.94
CUX2O14529 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC27.14■■□□□ 1.94
CUX2O14529 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC27.14■■□□□ 1.94
CUX2O14529 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC27.14■■□□□ 1.94
CUX2O14529 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC27.14■■□□□ 1.94
CUX2O14529 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC27.14■■□□□ 1.94
CUX2O14529 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC27.14■■□□□ 1.94
CUX2O14529 AC087045.2-201ENST00000606279 1003 ntBASIC27.14■■□□□ 1.94
CUX2O14529 AL353770.1-201ENST00000614915 403 ntBASIC27.14■■□□□ 1.94
CUX2O14529 AC103691.2-201ENST00000618824 433 ntBASIC27.14■■□□□ 1.94
CUX2O14529 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC27.14■■□□□ 1.94
CUX2O14529 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC27.14■■□□□ 1.94
CUX2O14529 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
CUX2O14529 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC27.14■■□□□ 1.94
CUX2O14529 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC27.14■■□□□ 1.94
CUX2O14529 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
CUX2O14529 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC27.14■■□□□ 1.94
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms