Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
SLC28A1O00337 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC15.66■□□□□ 0.1
SLC28A1O00337 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SLC28A1O00337 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SLC28A1O00337 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
SLC28A1O00337 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SLC28A1O00337 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SLC28A1O00337 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
SLC28A1O00337 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SLC28A1O00337 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC15.66■□□□□ 0.1
SLC28A1O00337 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
SLC28A1O00337 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC15.66■□□□□ 0.1
SLC28A1O00337 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC15.65■□□□□ 0.1
SLC28A1O00337 AC022532.1-201ENST00000624563 1728 ntBASIC15.65■□□□□ 0.1
SLC28A1O00337 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
SLC28A1O00337 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SLC28A1O00337 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SLC28A1O00337 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SLC28A1O00337 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
SLC28A1O00337 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
SLC28A1O00337 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
SLC28A1O00337 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SLC28A1O00337 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SLC28A1O00337 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
SLC28A1O00337 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SLC28A1O00337 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SLC28A1O00337 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SLC28A1O00337 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SLC28A1O00337 MRPL3P1-201ENST00000400109 1033 ntBASIC15.65■□□□□ 0.1
SLC28A1O00337 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SLC28A1O00337 RNA5SP419-201ENST00000515908 135 ntBASIC15.65■□□□□ 0.1
SLC28A1O00337 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
SLC28A1O00337 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SLC28A1O00337 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC15.65■□□□□ 0.1
SLC28A1O00337 Z83851.2-201ENST00000609564 659 ntBASIC15.65■□□□□ 0.1
SLC28A1O00337 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
SLC28A1O00337 MED16-214ENST00000617672 554 ntTSL 5 BASIC15.65■□□□□ 0.1
SLC28A1O00337 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SLC28A1O00337 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SLC28A1O00337 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SLC28A1O00337 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
SLC28A1O00337 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC15.65■□□□□ 0.1
SLC28A1O00337 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
SLC28A1O00337 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC15.65■□□□□ 0.1
SLC28A1O00337 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SLC28A1O00337 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
SLC28A1O00337 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC15.65■□□□□ 0.1
SLC28A1O00337 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC15.65■□□□□ 0.1
SLC28A1O00337 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
SLC28A1O00337 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
SLC28A1O00337 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
SLC28A1O00337 AMT-233ENST00000636522 1620 ntTSL 2 BASIC15.65■□□□□ 0.1
SLC28A1O00337 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SLC28A1O00337 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC15.64■□□□□ 0.1
SLC28A1O00337 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SLC28A1O00337 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC15.64■□□□□ 0.09
SLC28A1O00337 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
SLC28A1O00337 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC15.64■□□□□ 0.09
SLC28A1O00337 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
SLC28A1O00337 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SLC28A1O00337 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SLC28A1O00337 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
SLC28A1O00337 MBP-202ENST00000355994 2772 ntTSL 5 BASIC15.64■□□□□ 0.09
SLC28A1O00337 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
SLC28A1O00337 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SLC28A1O00337 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
SLC28A1O00337 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SLC28A1O00337 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC15.64■□□□□ 0.09
SLC28A1O00337 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SLC28A1O00337 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC15.64■□□□□ 0.09
SLC28A1O00337 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC15.64■□□□□ 0.09
SLC28A1O00337 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC15.64■□□□□ 0.09
SLC28A1O00337 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SLC28A1O00337 AC126177.1-201ENST00000547829 2218 ntBASIC15.64■□□□□ 0.09
SLC28A1O00337 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC15.64■□□□□ 0.09
SLC28A1O00337 AC073439.1-201ENST00000624121 1774 ntBASIC15.64■□□□□ 0.09
SLC28A1O00337 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
SLC28A1O00337 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SLC28A1O00337 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC15.64■□□□□ 0.09
SLC28A1O00337 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
SLC28A1O00337 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SLC28A1O00337 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SLC28A1O00337 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC15.64■□□□□ 0.09
SLC28A1O00337 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SLC28A1O00337 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC15.63■□□□□ 0.09
SLC28A1O00337 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SLC28A1O00337 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
SLC28A1O00337 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
SLC28A1O00337 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC15.63■□□□□ 0.09
SLC28A1O00337 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
SLC28A1O00337 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
SLC28A1O00337 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
SLC28A1O00337 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
SLC28A1O00337 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC15.63■□□□□ 0.09
SLC28A1O00337 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SLC28A1O00337 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
SLC28A1O00337 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
SLC28A1O00337 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
SLC28A1O00337 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SLC28A1O00337 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms