Protein–RNA interactions for Protein: O00322

UPK1A, Uroplakin-1a, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1AO00322 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC15.41■□□□□ 0.06
UPK1AO00322 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC15.41■□□□□ 0.06
UPK1AO00322 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
UPK1AO00322 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
UPK1AO00322 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC15.41■□□□□ 0.06
UPK1AO00322 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
UPK1AO00322 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
UPK1AO00322 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC15.4■□□□□ 0.06
UPK1AO00322 AC005622.1-201ENST00000636801 1703 ntBASIC15.4■□□□□ 0.06
UPK1AO00322 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC15.4■□□□□ 0.06
UPK1AO00322 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
UPK1AO00322 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
UPK1AO00322 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
UPK1AO00322 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC15.4■□□□□ 0.06
UPK1AO00322 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
UPK1AO00322 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
UPK1AO00322 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC15.4■□□□□ 0.06
UPK1AO00322 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
UPK1AO00322 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC15.4■□□□□ 0.06
UPK1AO00322 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
UPK1AO00322 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
UPK1AO00322 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
UPK1AO00322 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
UPK1AO00322 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC15.4■□□□□ 0.06
UPK1AO00322 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
UPK1AO00322 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
UPK1AO00322 AL022342.1-201ENST00000400363 863 ntBASIC15.4■□□□□ 0.06
UPK1AO00322 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
UPK1AO00322 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
UPK1AO00322 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
UPK1AO00322 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC15.4■□□□□ 0.06
UPK1AO00322 AP002472.1-201ENST00000577490 586 ntBASIC15.4■□□□□ 0.06
UPK1AO00322 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
UPK1AO00322 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC15.4■□□□□ 0.06
UPK1AO00322 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
UPK1AO00322 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC15.4■□□□□ 0.06
UPK1AO00322 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
UPK1AO00322 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
UPK1AO00322 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
UPK1AO00322 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
UPK1AO00322 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
UPK1AO00322 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
UPK1AO00322 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
UPK1AO00322 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
UPK1AO00322 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
UPK1AO00322 FAM45BP-202ENST00000592932 1624 ntBASIC15.39■□□□□ 0.05
UPK1AO00322 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
UPK1AO00322 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
UPK1AO00322 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
UPK1AO00322 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC15.39■□□□□ 0.05
UPK1AO00322 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
UPK1AO00322 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
UPK1AO00322 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
UPK1AO00322 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC15.39■□□□□ 0.05
UPK1AO00322 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
UPK1AO00322 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
UPK1AO00322 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
UPK1AO00322 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
UPK1AO00322 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC15.39■□□□□ 0.05
UPK1AO00322 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC15.39■□□□□ 0.05
UPK1AO00322 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
UPK1AO00322 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC15.39■□□□□ 0.05
UPK1AO00322 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
UPK1AO00322 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
UPK1AO00322 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC15.39■□□□□ 0.05
UPK1AO00322 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC15.39■□□□□ 0.05
UPK1AO00322 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
UPK1AO00322 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
UPK1AO00322 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
UPK1AO00322 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC15.39■□□□□ 0.05
UPK1AO00322 AC006486.2-201ENST00000624246 2199 ntBASIC15.39■□□□□ 0.05
UPK1AO00322 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
UPK1AO00322 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
UPK1AO00322 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
UPK1AO00322 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC15.39■□□□□ 0.05
UPK1AO00322 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
UPK1AO00322 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC15.39■□□□□ 0.05
UPK1AO00322 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
UPK1AO00322 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
UPK1AO00322 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC15.39■□□□□ 0.05
UPK1AO00322 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC15.38■□□□□ 0.05
UPK1AO00322 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC15.38■□□□□ 0.05
UPK1AO00322 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC15.38■□□□□ 0.05
UPK1AO00322 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
UPK1AO00322 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
UPK1AO00322 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
UPK1AO00322 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC15.38■□□□□ 0.05
UPK1AO00322 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
UPK1AO00322 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC15.38■□□□□ 0.05
UPK1AO00322 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC15.38■□□□□ 0.05
UPK1AO00322 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC15.38■□□□□ 0.05
UPK1AO00322 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC15.38■□□□□ 0.05
UPK1AO00322 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC15.38■□□□□ 0.05
UPK1AO00322 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC15.38■□□□□ 0.05
UPK1AO00322 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
UPK1AO00322 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
UPK1AO00322 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC15.38■□□□□ 0.05
UPK1AO00322 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
UPK1AO00322 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC15.38■□□□□ 0.05
UPK1AO00322 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC15.38■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms