Protein–RNA interactions for Protein: H7C350

CCDC188, Coiled-coil domain-containing protein 188, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188H7C350 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC188H7C350 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC188H7C350 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC16.9■□□□□ 0.3
CCDC188H7C350 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC188H7C350 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
CCDC188H7C350 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC188H7C350 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC188H7C350 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
CCDC188H7C350 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC188H7C350 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC188H7C350 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC16.9■□□□□ 0.3
CCDC188H7C350 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC16.9■□□□□ 0.3
CCDC188H7C350 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
CCDC188H7C350 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC188H7C350 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC188H7C350 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC188H7C350 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC188H7C350 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC16.9■□□□□ 0.3
CCDC188H7C350 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC16.9■□□□□ 0.3
CCDC188H7C350 PMS2P4-201ENST00000412466 1052 ntBASIC16.9■□□□□ 0.3
CCDC188H7C350 DUSP5P1-201ENST00000441325 1139 ntBASIC16.9■□□□□ 0.3
CCDC188H7C350 AC093724.1-201ENST00000448659 1027 ntBASIC16.9■□□□□ 0.3
CCDC188H7C350 AC136632.2-201ENST00000512891 861 ntBASIC16.9■□□□□ 0.3
CCDC188H7C350 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC16.9■□□□□ 0.3
CCDC188H7C350 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC16.9■□□□□ 0.3
CCDC188H7C350 AL031055.1-201ENST00000606362 631 ntBASIC16.9■□□□□ 0.3
CCDC188H7C350 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC16.9■□□□□ 0.3
CCDC188H7C350 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC16.9■□□□□ 0.3
CCDC188H7C350 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
CCDC188H7C350 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC188H7C350 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC188H7C350 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC188H7C350 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC16.9■□□□□ 0.3
CCDC188H7C350 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC188H7C350 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC188H7C350 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC16.9■□□□□ 0.3
CCDC188H7C350 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC188H7C350 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
CCDC188H7C350 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC188H7C350 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
CCDC188H7C350 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC16.9■□□□□ 0.3
CCDC188H7C350 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC16.9■□□□□ 0.3
CCDC188H7C350 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC16.9■□□□□ 0.3
CCDC188H7C350 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC16.9■□□□□ 0.3
CCDC188H7C350 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC188H7C350 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC188H7C350 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC188H7C350 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.3
CCDC188H7C350 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
CCDC188H7C350 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC188H7C350 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC188H7C350 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC188H7C350 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC188H7C350 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC16.89■□□□□ 0.29
CCDC188H7C350 AC105250.1-201ENST00000509378 2057 ntBASIC16.89■□□□□ 0.29
CCDC188H7C350 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC188H7C350 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC16.89■□□□□ 0.29
CCDC188H7C350 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC188H7C350 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC16.89■□□□□ 0.29
CCDC188H7C350 IGHV3-65-201ENST00000523210 341 ntBASIC16.89■□□□□ 0.29
CCDC188H7C350 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC16.89■□□□□ 0.29
CCDC188H7C350 ETFA-208ENST00000559602 792 ntTSL 3 BASIC16.89■□□□□ 0.29
CCDC188H7C350 PNMT-203ENST00000581428 677 ntTSL 2 BASIC16.89■□□□□ 0.29
CCDC188H7C350 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC16.89■□□□□ 0.29
CCDC188H7C350 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC16.89■□□□□ 0.29
CCDC188H7C350 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
CCDC188H7C350 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC188H7C350 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC188H7C350 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC188H7C350 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC188H7C350 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC188H7C350 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
CCDC188H7C350 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC188H7C350 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
CCDC188H7C350 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC188H7C350 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC188H7C350 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC188H7C350 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC188H7C350 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC16.89■□□□□ 0.29
CCDC188H7C350 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC188H7C350 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC188H7C350 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
CCDC188H7C350 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC16.89■□□□□ 0.29
CCDC188H7C350 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC188H7C350 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC188H7C350 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
CCDC188H7C350 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC16.88■□□□□ 0.29
CCDC188H7C350 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC16.88■□□□□ 0.29
CCDC188H7C350 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC188H7C350 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC188H7C350 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC188H7C350 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC16.88■□□□□ 0.29
CCDC188H7C350 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC188H7C350 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC188H7C350 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC16.88■□□□□ 0.29
CCDC188H7C350 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC16.88■□□□□ 0.29
CCDC188H7C350 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC188H7C350 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC16.88■□□□□ 0.29
CCDC188H7C350 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC16.88■□□□□ 0.29
CCDC188H7C350 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms