Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC12.34□□□□□ -0.43
COL6A5A8TX70 MIR22HG-201ENST00000334146 1383 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
COL6A5A8TX70 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
COL6A5A8TX70 FAM168A-204ENST00000450446 1364 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
COL6A5A8TX70 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC12.34□□□□□ -0.43
COL6A5A8TX70 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
COL6A5A8TX70 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC12.34□□□□□ -0.43
COL6A5A8TX70 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
COL6A5A8TX70 AC093525.9-201ENST00000624961 1746 ntBASIC12.34□□□□□ -0.43
COL6A5A8TX70 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC12.33□□□□□ -0.43
COL6A5A8TX70 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC12.33□□□□□ -0.43
COL6A5A8TX70 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.43
COL6A5A8TX70 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
COL6A5A8TX70 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC12.33□□□□□ -0.44
COL6A5A8TX70 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
COL6A5A8TX70 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
COL6A5A8TX70 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC12.33□□□□□ -0.44
COL6A5A8TX70 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC12.33□□□□□ -0.44
COL6A5A8TX70 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC12.33□□□□□ -0.44
COL6A5A8TX70 AC012362.1-201ENST00000434906 739 ntBASIC12.33□□□□□ -0.44
COL6A5A8TX70 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC12.33□□□□□ -0.44
COL6A5A8TX70 AC010234.1-201ENST00000494599 870 ntBASIC12.33□□□□□ -0.44
COL6A5A8TX70 SCARNA21-201ENST00000517026 139 ntBASIC12.33□□□□□ -0.44
COL6A5A8TX70 LGALS3-204ENST00000554715 916 ntTSL 3 BASIC12.33□□□□□ -0.44
COL6A5A8TX70 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
COL6A5A8TX70 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC12.33□□□□□ -0.44
COL6A5A8TX70 BOC-212ENST00000485230 2173 ntTSL 2 BASIC12.33□□□□□ -0.44
COL6A5A8TX70 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC12.33□□□□□ -0.44
COL6A5A8TX70 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC12.33□□□□□ -0.44
COL6A5A8TX70 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC12.33□□□□□ -0.44
COL6A5A8TX70 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC12.33□□□□□ -0.44
COL6A5A8TX70 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
COL6A5A8TX70 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
COL6A5A8TX70 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC12.33□□□□□ -0.44
COL6A5A8TX70 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
COL6A5A8TX70 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC12.33□□□□□ -0.44
COL6A5A8TX70 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
COL6A5A8TX70 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
COL6A5A8TX70 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC12.33□□□□□ -0.44
COL6A5A8TX70 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
COL6A5A8TX70 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
COL6A5A8TX70 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
COL6A5A8TX70 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
COL6A5A8TX70 PAQR9-AS1-203ENST00000497652 516 ntTSL 3 BASIC12.33□□□□□ -0.44
COL6A5A8TX70 EMP2-203ENST00000536829 781 ntAPPRIS P1 TSL 2 BASIC12.33□□□□□ -0.44
COL6A5A8TX70 PTGR1-209ENST00000538962 1200 ntTSL 2 BASIC12.33□□□□□ -0.44
COL6A5A8TX70 AC012379.2-201ENST00000560237 765 ntTSL 2 BASIC12.33□□□□□ -0.44
COL6A5A8TX70 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
COL6A5A8TX70 AP005901.3-201ENST00000581666 415 ntTSL 3 BASIC12.33□□□□□ -0.44
COL6A5A8TX70 IRF3-225ENST00000600022 882 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
COL6A5A8TX70 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC12.33□□□□□ -0.44
COL6A5A8TX70 MIR6842-201ENST00000612539 65 ntBASIC12.33□□□□□ -0.44
COL6A5A8TX70 IFI27-215ENST00000621160 644 ntAPPRIS P2 TSL 1 (best) BASIC12.33□□□□□ -0.44
COL6A5A8TX70 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
COL6A5A8TX70 TP73-209ENST00000603362 1668 ntTSL 5 BASIC12.33□□□□□ -0.44
COL6A5A8TX70 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
COL6A5A8TX70 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
COL6A5A8TX70 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
COL6A5A8TX70 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
COL6A5A8TX70 SGCA-201ENST00000262018 1432 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
COL6A5A8TX70 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC12.32□□□□□ -0.44
COL6A5A8TX70 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
COL6A5A8TX70 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC12.32□□□□□ -0.44
COL6A5A8TX70 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC12.32□□□□□ -0.44
COL6A5A8TX70 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC12.32□□□□□ -0.44
COL6A5A8TX70 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
COL6A5A8TX70 PSMB10-201ENST00000358514 1218 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
COL6A5A8TX70 TRO-205ENST00000399736 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
COL6A5A8TX70 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC12.32□□□□□ -0.44
COL6A5A8TX70 FXYD2-205ENST00000528014 672 ntAPPRIS P1 TSL 3 BASIC12.32□□□□□ -0.44
COL6A5A8TX70 RNF41-210ENST00000552244 716 ntTSL 3 BASIC12.32□□□□□ -0.44
COL6A5A8TX70 IFT20-206ENST00000578122 834 ntTSL 2 BASIC12.32□□□□□ -0.44
COL6A5A8TX70 IFT20-208ENST00000578985 831 ntTSL 3 BASIC12.32□□□□□ -0.44
COL6A5A8TX70 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC12.32□□□□□ -0.44
COL6A5A8TX70 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
COL6A5A8TX70 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
COL6A5A8TX70 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
COL6A5A8TX70 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
COL6A5A8TX70 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC12.32□□□□□ -0.44
COL6A5A8TX70 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
COL6A5A8TX70 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC12.32□□□□□ -0.44
COL6A5A8TX70 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC12.32□□□□□ -0.44
COL6A5A8TX70 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
COL6A5A8TX70 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
COL6A5A8TX70 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
COL6A5A8TX70 SCAF11-203ENST00000395453 1336 ntAPPRIS ALT2 TSL 2 BASIC12.32□□□□□ -0.44
COL6A5A8TX70 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
COL6A5A8TX70 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
COL6A5A8TX70 SNX33P1-201ENST00000592116 1762 ntBASIC12.32□□□□□ -0.44
COL6A5A8TX70 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC12.32□□□□□ -0.44
COL6A5A8TX70 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
COL6A5A8TX70 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC12.32□□□□□ -0.44
COL6A5A8TX70 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
COL6A5A8TX70 PDIA3P2-201ENST00000428073 158 ntBASIC12.32□□□□□ -0.44
COL6A5A8TX70 AC027139.1-201ENST00000565286 951 ntBASIC12.32□□□□□ -0.44
COL6A5A8TX70 AC006435.2-201ENST00000574290 846 ntTSL 5 BASIC12.32□□□□□ -0.44
COL6A5A8TX70 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
COL6A5A8TX70 ZBTB45P2-201ENST00000452245 1531 ntBASIC12.32□□□□□ -0.44
COL6A5A8TX70 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC12.31□□□□□ -0.44
COL6A5A8TX70 GNAO1-205ENST00000563661 1351 ntTSL 2 BASIC12.31□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 52.1 ms