Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC14.3□□□□□ -0.12
RHBDD3Q9Y3P4 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
RHBDD3Q9Y3P4 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
RHBDD3Q9Y3P4 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
RHBDD3Q9Y3P4 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
RHBDD3Q9Y3P4 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
RHBDD3Q9Y3P4 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC14.3□□□□□ -0.12
RHBDD3Q9Y3P4 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC14.3□□□□□ -0.12
RHBDD3Q9Y3P4 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC14.3□□□□□ -0.12
RHBDD3Q9Y3P4 AL365209.1-201ENST00000624418 6473 ntBASIC14.3□□□□□ -0.12
RHBDD3Q9Y3P4 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC14.3□□□□□ -0.12
RHBDD3Q9Y3P4 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC14.3□□□□□ -0.12
RHBDD3Q9Y3P4 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
RHBDD3Q9Y3P4 CDC14C-201ENST00000428251 1719 ntBASIC14.29□□□□□ -0.12
RHBDD3Q9Y3P4 AL161772.1-201ENST00000610494 4412 ntBASIC14.29□□□□□ -0.12
RHBDD3Q9Y3P4 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC14.29□□□□□ -0.12
RHBDD3Q9Y3P4 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC14.29□□□□□ -0.12
RHBDD3Q9Y3P4 AP005117.1-202ENST00000581724 1908 ntBASIC14.29□□□□□ -0.12
RHBDD3Q9Y3P4 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
RHBDD3Q9Y3P4 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
RHBDD3Q9Y3P4 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
RHBDD3Q9Y3P4 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
RHBDD3Q9Y3P4 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
RHBDD3Q9Y3P4 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
RHBDD3Q9Y3P4 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
RHBDD3Q9Y3P4 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC14.29□□□□□ -0.12
RHBDD3Q9Y3P4 IGLL3P-201ENST00000412472 434 ntBASIC14.29□□□□□ -0.12
RHBDD3Q9Y3P4 AL513480.1-201ENST00000451731 511 ntBASIC14.29□□□□□ -0.12
RHBDD3Q9Y3P4 CD63-204ENST00000546939 779 ntTSL 3 BASIC14.29□□□□□ -0.12
RHBDD3Q9Y3P4 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC14.29□□□□□ -0.12
RHBDD3Q9Y3P4 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
RHBDD3Q9Y3P4 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC14.29□□□□□ -0.12
RHBDD3Q9Y3P4 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC14.29□□□□□ -0.12
RHBDD3Q9Y3P4 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
RHBDD3Q9Y3P4 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
RHBDD3Q9Y3P4 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
RHBDD3Q9Y3P4 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
RHBDD3Q9Y3P4 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
RHBDD3Q9Y3P4 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
RHBDD3Q9Y3P4 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
RHBDD3Q9Y3P4 HARS-203ENST00000431330 1774 ntTSL 2 BASIC14.29□□□□□ -0.12
RHBDD3Q9Y3P4 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
RHBDD3Q9Y3P4 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
RHBDD3Q9Y3P4 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
RHBDD3Q9Y3P4 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
RHBDD3Q9Y3P4 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
RHBDD3Q9Y3P4 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
RHBDD3Q9Y3P4 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
RHBDD3Q9Y3P4 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
RHBDD3Q9Y3P4 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
RHBDD3Q9Y3P4 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
RHBDD3Q9Y3P4 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
RHBDD3Q9Y3P4 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RHBDD3Q9Y3P4 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
RHBDD3Q9Y3P4 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
RHBDD3Q9Y3P4 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
RHBDD3Q9Y3P4 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
RHBDD3Q9Y3P4 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RHBDD3Q9Y3P4 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RHBDD3Q9Y3P4 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC14.28□□□□□ -0.12
RHBDD3Q9Y3P4 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC14.28□□□□□ -0.12
RHBDD3Q9Y3P4 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
RHBDD3Q9Y3P4 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC14.28□□□□□ -0.12
RHBDD3Q9Y3P4 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC14.28□□□□□ -0.12
RHBDD3Q9Y3P4 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RHBDD3Q9Y3P4 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
RHBDD3Q9Y3P4 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC14.28□□□□□ -0.12
RHBDD3Q9Y3P4 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC14.28□□□□□ -0.12
RHBDD3Q9Y3P4 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC14.28□□□□□ -0.12
RHBDD3Q9Y3P4 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RHBDD3Q9Y3P4 HCG4B-203ENST00000450128 991 ntBASIC14.28□□□□□ -0.12
RHBDD3Q9Y3P4 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
RHBDD3Q9Y3P4 POU5F1P6-201ENST00000466990 990 ntBASIC14.28□□□□□ -0.12
RHBDD3Q9Y3P4 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
RHBDD3Q9Y3P4 AC079776.4-201ENST00000511039 504 ntBASIC14.28□□□□□ -0.12
RHBDD3Q9Y3P4 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC14.28□□□□□ -0.12
RHBDD3Q9Y3P4 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC14.28□□□□□ -0.12
RHBDD3Q9Y3P4 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
RHBDD3Q9Y3P4 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RHBDD3Q9Y3P4 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RHBDD3Q9Y3P4 KLK8-205ENST00000593490 267 ntTSL 3 BASIC14.28□□□□□ -0.12
RHBDD3Q9Y3P4 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RHBDD3Q9Y3P4 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
RHBDD3Q9Y3P4 AL121894.2-201ENST00000602977 491 ntBASIC14.28□□□□□ -0.12
RHBDD3Q9Y3P4 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
RHBDD3Q9Y3P4 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC14.28□□□□□ -0.12
RHBDD3Q9Y3P4 PCGF3-213ENST00000620529 1899 ntBASIC14.28□□□□□ -0.12
RHBDD3Q9Y3P4 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC14.28□□□□□ -0.12
RHBDD3Q9Y3P4 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
RHBDD3Q9Y3P4 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
RHBDD3Q9Y3P4 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
RHBDD3Q9Y3P4 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
RHBDD3Q9Y3P4 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
RHBDD3Q9Y3P4 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC14.27□□□□□ -0.12
RHBDD3Q9Y3P4 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.12
RHBDD3Q9Y3P4 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
RHBDD3Q9Y3P4 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
RHBDD3Q9Y3P4 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
RHBDD3Q9Y3P4 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
RHBDD3Q9Y3P4 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms