Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
FOXA2Q9Y261 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC13.18□□□□□ -0.3
FOXA2Q9Y261 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC13.18□□□□□ -0.3
FOXA2Q9Y261 AP000347.1-202ENST00000435868 847 ntBASIC13.18□□□□□ -0.3
FOXA2Q9Y261 KRT18P2-201ENST00000447938 1258 ntBASIC13.18□□□□□ -0.3
FOXA2Q9Y261 POLD2P1-201ENST00000511220 997 ntBASIC13.18□□□□□ -0.3
FOXA2Q9Y261 SMN2-210ENST00000511812 867 ntTSL 2 BASIC13.18□□□□□ -0.3
FOXA2Q9Y261 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC13.18□□□□□ -0.3
FOXA2Q9Y261 AC040169.1-201ENST00000565382 521 ntBASIC13.18□□□□□ -0.3
FOXA2Q9Y261 MIR3909-201ENST00000579518 119 ntBASIC13.18□□□□□ -0.3
FOXA2Q9Y261 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
FOXA2Q9Y261 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC13.18□□□□□ -0.3
FOXA2Q9Y261 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC13.18□□□□□ -0.3
FOXA2Q9Y261 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
FOXA2Q9Y261 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
FOXA2Q9Y261 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
FOXA2Q9Y261 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
FOXA2Q9Y261 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
FOXA2Q9Y261 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
FOXA2Q9Y261 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
FOXA2Q9Y261 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
FOXA2Q9Y261 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
FOXA2Q9Y261 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
FOXA2Q9Y261 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
FOXA2Q9Y261 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
FOXA2Q9Y261 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
FOXA2Q9Y261 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
FOXA2Q9Y261 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
FOXA2Q9Y261 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC13.17□□□□□ -0.3
FOXA2Q9Y261 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC13.17□□□□□ -0.3
FOXA2Q9Y261 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
FOXA2Q9Y261 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
FOXA2Q9Y261 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
FOXA2Q9Y261 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
FOXA2Q9Y261 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
FOXA2Q9Y261 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
FOXA2Q9Y261 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
FOXA2Q9Y261 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
FOXA2Q9Y261 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
FOXA2Q9Y261 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC13.17□□□□□ -0.3
FOXA2Q9Y261 CD99-202ENST00000381180 530 ntTSL 2 BASIC13.17□□□□□ -0.3
FOXA2Q9Y261 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC13.17□□□□□ -0.3
FOXA2Q9Y261 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC13.17□□□□□ -0.3
FOXA2Q9Y261 KRT19P2-202ENST00000557173 1012 ntBASIC13.17□□□□□ -0.3
FOXA2Q9Y261 AC002347.1-201ENST00000569543 541 ntBASIC13.17□□□□□ -0.3
FOXA2Q9Y261 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC13.17□□□□□ -0.3
FOXA2Q9Y261 MED16-214ENST00000617672 554 ntTSL 5 BASIC13.17□□□□□ -0.3
FOXA2Q9Y261 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC13.17□□□□□ -0.3
FOXA2Q9Y261 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
FOXA2Q9Y261 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
FOXA2Q9Y261 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
FOXA2Q9Y261 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
FOXA2Q9Y261 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
FOXA2Q9Y261 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC13.17□□□□□ -0.3
FOXA2Q9Y261 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
FOXA2Q9Y261 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC13.17□□□□□ -0.3
FOXA2Q9Y261 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC13.17□□□□□ -0.3
FOXA2Q9Y261 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC13.17□□□□□ -0.3
FOXA2Q9Y261 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
FOXA2Q9Y261 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
FOXA2Q9Y261 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
FOXA2Q9Y261 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC13.17□□□□□ -0.3
FOXA2Q9Y261 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
FOXA2Q9Y261 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC13.16□□□□□ -0.3
FOXA2Q9Y261 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC13.16□□□□□ -0.3
FOXA2Q9Y261 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC13.16□□□□□ -0.3
FOXA2Q9Y261 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
FOXA2Q9Y261 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
FOXA2Q9Y261 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
FOXA2Q9Y261 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
FOXA2Q9Y261 AC025580.3-201ENST00000617932 1424 ntBASIC13.16□□□□□ -0.3
FOXA2Q9Y261 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC13.16□□□□□ -0.3
FOXA2Q9Y261 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC13.16□□□□□ -0.3
FOXA2Q9Y261 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
FOXA2Q9Y261 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC13.16□□□□□ -0.3
FOXA2Q9Y261 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
FOXA2Q9Y261 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
FOXA2Q9Y261 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC13.16□□□□□ -0.3
FOXA2Q9Y261 RNU1-129P-201ENST00000384064 167 ntBASIC13.16□□□□□ -0.3
FOXA2Q9Y261 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC13.16□□□□□ -0.3
FOXA2Q9Y261 VMO1-203ENST00000416307 712 ntTSL 2 BASIC13.16□□□□□ -0.3
FOXA2Q9Y261 NMU-203ENST00000507338 658 ntTSL 3 BASIC13.16□□□□□ -0.3
FOXA2Q9Y261 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC13.16□□□□□ -0.3
FOXA2Q9Y261 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC13.16□□□□□ -0.3
FOXA2Q9Y261 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC13.16□□□□□ -0.3
FOXA2Q9Y261 U1.21-201ENST00000580816 167 ntBASIC13.16□□□□□ -0.3
FOXA2Q9Y261 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC13.16□□□□□ -0.3
FOXA2Q9Y261 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
FOXA2Q9Y261 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC13.16□□□□□ -0.3
FOXA2Q9Y261 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
FOXA2Q9Y261 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC13.16□□□□□ -0.3
FOXA2Q9Y261 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC13.16□□□□□ -0.3
FOXA2Q9Y261 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC13.16□□□□□ -0.3
FOXA2Q9Y261 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
FOXA2Q9Y261 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC13.16□□□□□ -0.3
FOXA2Q9Y261 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC13.16□□□□□ -0.3
FOXA2Q9Y261 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC13.16□□□□□ -0.3
FOXA2Q9Y261 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
FOXA2Q9Y261 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC13.16□□□□□ -0.3
FOXA2Q9Y261 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 68 ms