Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC16.25■□□□□ 0.19
TM9SF3Q9HD45 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TM9SF3Q9HD45 AC004840.1-201ENST00000636359 365 ntBASIC16.25■□□□□ 0.19
TM9SF3Q9HD45 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TM9SF3Q9HD45 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
TM9SF3Q9HD45 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TM9SF3Q9HD45 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC16.25■□□□□ 0.19
TM9SF3Q9HD45 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC16.25■□□□□ 0.19
TM9SF3Q9HD45 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
TM9SF3Q9HD45 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC16.25■□□□□ 0.19
TM9SF3Q9HD45 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
TM9SF3Q9HD45 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
TM9SF3Q9HD45 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TM9SF3Q9HD45 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TM9SF3Q9HD45 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TM9SF3Q9HD45 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
TM9SF3Q9HD45 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TM9SF3Q9HD45 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC16.24■□□□□ 0.19
TM9SF3Q9HD45 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
TM9SF3Q9HD45 OR8S1-201ENST00000310194 1080 ntBASIC16.24■□□□□ 0.19
TM9SF3Q9HD45 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
TM9SF3Q9HD45 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TM9SF3Q9HD45 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TM9SF3Q9HD45 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TM9SF3Q9HD45 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TM9SF3Q9HD45 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
TM9SF3Q9HD45 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
TM9SF3Q9HD45 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC16.24■□□□□ 0.19
TM9SF3Q9HD45 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC16.24■□□□□ 0.19
TM9SF3Q9HD45 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC16.24■□□□□ 0.19
TM9SF3Q9HD45 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC16.24■□□□□ 0.19
TM9SF3Q9HD45 HLA-J-202ENST00000469281 1241 ntBASIC16.24■□□□□ 0.19
TM9SF3Q9HD45 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC16.24■□□□□ 0.19
TM9SF3Q9HD45 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC16.24■□□□□ 0.19
TM9SF3Q9HD45 TP53TG3HP-202ENST00000569755 579 ntBASIC16.24■□□□□ 0.19
TM9SF3Q9HD45 RNA5-8SN1-201ENST00000610460 153 ntBASIC16.24■□□□□ 0.19
TM9SF3Q9HD45 RNA5-8SN5-202ENST00000612463 153 ntBASIC16.24■□□□□ 0.19
TM9SF3Q9HD45 RNA5-8SN4-201ENST00000613359 153 ntBASIC16.24■□□□□ 0.19
TM9SF3Q9HD45 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC16.24■□□□□ 0.19
TM9SF3Q9HD45 RNA5-8SN5-201ENST00000619471 153 ntBASIC16.24■□□□□ 0.19
TM9SF3Q9HD45 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
TM9SF3Q9HD45 AL596257.1-201ENST00000641463 2694 ntBASIC16.24■□□□□ 0.19
TM9SF3Q9HD45 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
TM9SF3Q9HD45 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
TM9SF3Q9HD45 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
TM9SF3Q9HD45 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TM9SF3Q9HD45 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
TM9SF3Q9HD45 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TM9SF3Q9HD45 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TM9SF3Q9HD45 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TM9SF3Q9HD45 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
TM9SF3Q9HD45 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TM9SF3Q9HD45 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
TM9SF3Q9HD45 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC16.24■□□□□ 0.19
TM9SF3Q9HD45 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
TM9SF3Q9HD45 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC16.23■□□□□ 0.19
TM9SF3Q9HD45 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
TM9SF3Q9HD45 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
TM9SF3Q9HD45 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC16.23■□□□□ 0.19
TM9SF3Q9HD45 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
TM9SF3Q9HD45 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TM9SF3Q9HD45 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC16.23■□□□□ 0.19
TM9SF3Q9HD45 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
TM9SF3Q9HD45 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
TM9SF3Q9HD45 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
TM9SF3Q9HD45 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC16.23■□□□□ 0.19
TM9SF3Q9HD45 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
TM9SF3Q9HD45 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TM9SF3Q9HD45 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC16.23■□□□□ 0.19
TM9SF3Q9HD45 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
TM9SF3Q9HD45 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC16.23■□□□□ 0.19
TM9SF3Q9HD45 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC16.23■□□□□ 0.19
TM9SF3Q9HD45 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
TM9SF3Q9HD45 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC16.23■□□□□ 0.19
TM9SF3Q9HD45 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TM9SF3Q9HD45 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC16.23■□□□□ 0.19
TM9SF3Q9HD45 RPS19-201ENST00000221975 500 ntTSL 3 BASIC16.23■□□□□ 0.19
TM9SF3Q9HD45 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TM9SF3Q9HD45 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
TM9SF3Q9HD45 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
TM9SF3Q9HD45 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
TM9SF3Q9HD45 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC16.23■□□□□ 0.19
TM9SF3Q9HD45 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC16.23■□□□□ 0.19
TM9SF3Q9HD45 KRT17P7-201ENST00000451704 1104 ntBASIC16.23■□□□□ 0.19
TM9SF3Q9HD45 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC16.23■□□□□ 0.19
TM9SF3Q9HD45 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
TM9SF3Q9HD45 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC16.23■□□□□ 0.19
TM9SF3Q9HD45 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC16.23■□□□□ 0.19
TM9SF3Q9HD45 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TM9SF3Q9HD45 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
TM9SF3Q9HD45 PCDHB17P-201ENST00000539533 2393 ntBASIC16.23■□□□□ 0.19
TM9SF3Q9HD45 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
TM9SF3Q9HD45 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TM9SF3Q9HD45 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
TM9SF3Q9HD45 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TM9SF3Q9HD45 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
TM9SF3Q9HD45 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TM9SF3Q9HD45 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TM9SF3Q9HD45 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TM9SF3Q9HD45 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms