Protein–RNA interactions for Protein: Q9H270

VPS11, Vacuolar protein sorting-associated protein 11 homolog, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11Q9H270 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC16.4■□□□□ 0.22
VPS11Q9H270 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC16.4■□□□□ 0.22
VPS11Q9H270 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VPS11Q9H270 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC16.4■□□□□ 0.22
VPS11Q9H270 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC16.4■□□□□ 0.22
VPS11Q9H270 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC16.4■□□□□ 0.22
VPS11Q9H270 AC073621.1-201ENST00000392730 636 ntBASIC16.4■□□□□ 0.22
VPS11Q9H270 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VPS11Q9H270 MIR1224-201ENST00000408193 85 ntBASIC16.4■□□□□ 0.22
VPS11Q9H270 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
VPS11Q9H270 KRT18P27-201ENST00000427733 1299 ntBASIC16.4■□□□□ 0.22
VPS11Q9H270 DUSP5P1-201ENST00000441325 1139 ntBASIC16.4■□□□□ 0.22
VPS11Q9H270 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC16.4■□□□□ 0.22
VPS11Q9H270 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC16.4■□□□□ 0.22
VPS11Q9H270 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC16.4■□□□□ 0.22
VPS11Q9H270 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC16.4■□□□□ 0.22
VPS11Q9H270 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC16.4■□□□□ 0.22
VPS11Q9H270 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC16.4■□□□□ 0.22
VPS11Q9H270 CYB561-216ENST00000582297 897 ntTSL 3 BASIC16.4■□□□□ 0.22
VPS11Q9H270 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC16.4■□□□□ 0.22
VPS11Q9H270 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC16.4■□□□□ 0.22
VPS11Q9H270 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VPS11Q9H270 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC16.4■□□□□ 0.22
VPS11Q9H270 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
VPS11Q9H270 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC16.4■□□□□ 0.22
VPS11Q9H270 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VPS11Q9H270 SSR4P1-203ENST00000599569 2260 ntBASIC16.4■□□□□ 0.22
VPS11Q9H270 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC16.4■□□□□ 0.22
VPS11Q9H270 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VPS11Q9H270 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VPS11Q9H270 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
VPS11Q9H270 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VPS11Q9H270 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC16.4■□□□□ 0.22
VPS11Q9H270 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
VPS11Q9H270 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
VPS11Q9H270 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VPS11Q9H270 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VPS11Q9H270 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC16.39■□□□□ 0.22
VPS11Q9H270 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS11Q9H270 AC005622.1-201ENST00000636801 1703 ntBASIC16.39■□□□□ 0.21
VPS11Q9H270 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC16.39■□□□□ 0.21
VPS11Q9H270 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC16.39■□□□□ 0.21
VPS11Q9H270 LINC02228-204ENST00000642115 2962 ntBASIC16.39■□□□□ 0.21
VPS11Q9H270 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
VPS11Q9H270 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS11Q9H270 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS11Q9H270 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC16.39■□□□□ 0.21
VPS11Q9H270 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS11Q9H270 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC16.39■□□□□ 0.21
VPS11Q9H270 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
VPS11Q9H270 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS11Q9H270 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
VPS11Q9H270 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC16.39■□□□□ 0.21
VPS11Q9H270 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
VPS11Q9H270 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC16.39■□□□□ 0.21
VPS11Q9H270 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC16.39■□□□□ 0.21
VPS11Q9H270 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC16.39■□□□□ 0.21
VPS11Q9H270 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC16.39■□□□□ 0.21
VPS11Q9H270 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
VPS11Q9H270 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC16.39■□□□□ 0.21
VPS11Q9H270 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS11Q9H270 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS11Q9H270 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC16.39■□□□□ 0.21
VPS11Q9H270 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS11Q9H270 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS11Q9H270 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS11Q9H270 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
VPS11Q9H270 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS11Q9H270 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS11Q9H270 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS11Q9H270 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC16.39■□□□□ 0.21
VPS11Q9H270 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
VPS11Q9H270 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS11Q9H270 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
VPS11Q9H270 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS11Q9H270 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
VPS11Q9H270 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
VPS11Q9H270 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS11Q9H270 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS11Q9H270 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
VPS11Q9H270 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC16.38■□□□□ 0.21
VPS11Q9H270 FAM45BP-202ENST00000592932 1624 ntBASIC16.38■□□□□ 0.21
VPS11Q9H270 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
VPS11Q9H270 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
VPS11Q9H270 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC16.38■□□□□ 0.21
VPS11Q9H270 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC16.38■□□□□ 0.21
VPS11Q9H270 DPM2-202ENST00000373110 738 ntTSL 2 BASIC16.38■□□□□ 0.21
VPS11Q9H270 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC16.38■□□□□ 0.21
VPS11Q9H270 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
VPS11Q9H270 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC16.38■□□□□ 0.21
VPS11Q9H270 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS11Q9H270 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
VPS11Q9H270 AC073648.2-201ENST00000510116 352 ntBASIC16.38■□□□□ 0.21
VPS11Q9H270 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC16.38■□□□□ 0.21
VPS11Q9H270 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC16.38■□□□□ 0.21
VPS11Q9H270 MMP17-203ENST00000535004 719 ntTSL 3 BASIC16.38■□□□□ 0.21
VPS11Q9H270 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS11Q9H270 AC008667.4-201ENST00000607370 168 ntBASIC16.38■□□□□ 0.21
VPS11Q9H270 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
VPS11Q9H270 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms