Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
LINC00643Q86TS7 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC10.09□□□□□ -0.79
LINC00643Q86TS7 ST3GAL2-202ENST00000393640 8872 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
LINC00643Q86TS7 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC10.09□□□□□ -0.79
LINC00643Q86TS7 LSS-211ENST00000522411 2523 ntTSL 2 BASIC10.09□□□□□ -0.79
LINC00643Q86TS7 ACADM-218ENST00000541113 2535 ntTSL 1 (best) BASIC10.09□□□□□ -0.79
LINC00643Q86TS7 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC10.09□□□□□ -0.79
LINC00643Q86TS7 SMARCA4-204ENST00000444061 4938 ntAPPRIS ALT1 TSL 5 BASIC10.09□□□□□ -0.79
LINC00643Q86TS7 PRRT3-203ENST00000412055 3761 ntAPPRIS P3 TSL 1 (best) BASIC10.09□□□□□ -0.79
LINC00643Q86TS7 RCBTB2-205ENST00000544492 2622 ntTSL 2 BASIC10.09□□□□□ -0.79
LINC00643Q86TS7 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC10.09□□□□□ -0.79
LINC00643Q86TS7 MYRF-202ENST00000278836 5927 ntAPPRIS ALT2 TSL 1 (best) BASIC10.09□□□□□ -0.79
LINC00643Q86TS7 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC10.09□□□□□ -0.79
LINC00643Q86TS7 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC10.09□□□□□ -0.79
LINC00643Q86TS7 SAMD4B-201ENST00000314471 4519 ntAPPRIS P3 TSL 1 (best) BASIC10.09□□□□□ -0.79
LINC00643Q86TS7 ASAP1-201ENST00000357668 6344 ntAPPRIS ALT2 TSL 5 BASIC10.09□□□□□ -0.79
LINC00643Q86TS7 LINC00863-201ENST00000439559 3287 ntTSL 5 BASIC10.09□□□□□ -0.79
LINC00643Q86TS7 NTNG1-204ENST00000370067 4628 ntTSL 5 BASIC10.09□□□□□ -0.79
LINC00643Q86TS7 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
LINC00643Q86TS7 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC10.09□□□□□ -0.79
LINC00643Q86TS7 ATP5J2-PTCD1-201ENST00000413834 2491 ntAPPRIS P1 TSL 2 BASIC10.09□□□□□ -0.79
LINC00643Q86TS7 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC10.09□□□□□ -0.79
LINC00643Q86TS7 TBC1D8-AS1-201ENST00000610202 2478 ntTSL 1 (best) BASIC10.09□□□□□ -0.79
LINC00643Q86TS7 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
LINC00643Q86TS7 FIG4-201ENST00000230124 3011 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
LINC00643Q86TS7 RPS6KA1-213ENST00000526792 2596 ntTSL 5 BASIC10.09□□□□□ -0.79
LINC00643Q86TS7 SPDYE16-203ENST00000633306 2591 ntAPPRIS ALT2 TSL 5 BASIC10.09□□□□□ -0.79
LINC00643Q86TS7 LILRB5-203ENST00000449561 2137 ntAPPRIS ALT2 TSL 1 (best) BASIC10.09□□□□□ -0.79
LINC00643Q86TS7 MAP7D3-201ENST00000316077 4567 ntAPPRIS P3 TSL 1 (best) BASIC10.09□□□□□ -0.79
LINC00643Q86TS7 ADD2-202ENST00000355733 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC10.09□□□□□ -0.79
LINC00643Q86TS7 GSE1-202ENST00000393243 7140 ntAPPRIS ALT2 TSL 1 (best) BASIC10.09□□□□□ -0.79
LINC00643Q86TS7 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
LINC00643Q86TS7 RNF43-201ENST00000407977 5516 ntAPPRIS P1 TSL 2 BASIC10.08□□□□□ -0.8
LINC00643Q86TS7 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC10.08□□□□□ -0.8
LINC00643Q86TS7 ADAM17-203ENST00000497134 1873 ntTSL 5 BASIC10.08□□□□□ -0.8
LINC00643Q86TS7 FP325330.2-201ENST00000624219 5630 ntBASIC10.08□□□□□ -0.8
LINC00643Q86TS7 DSTN-201ENST00000246069 3617 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
LINC00643Q86TS7 FAM90A1-203ENST00000538603 2513 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
LINC00643Q86TS7 TMEM260-201ENST00000261556 4264 ntAPPRIS P1 TSL 2 BASIC10.08□□□□□ -0.8
LINC00643Q86TS7 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC10.08□□□□□ -0.8
LINC00643Q86TS7 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
LINC00643Q86TS7 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
LINC00643Q86TS7 AC108002.1-201ENST00000520572 5684 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
LINC00643Q86TS7 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC10.08□□□□□ -0.8
LINC00643Q86TS7 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
LINC00643Q86TS7 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC10.08□□□□□ -0.8
LINC00643Q86TS7 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
LINC00643Q86TS7 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC10.08□□□□□ -0.8
LINC00643Q86TS7 VAPA-202ENST00000400000 6815 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
LINC00643Q86TS7 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC10.08□□□□□ -0.8
LINC00643Q86TS7 SDC2-201ENST00000302190 3759 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
LINC00643Q86TS7 CAP1-203ENST00000372797 3105 ntAPPRIS P3 TSL 1 (best) BASIC10.08□□□□□ -0.8
LINC00643Q86TS7 TUBGCP3-201ENST00000261965 3899 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
LINC00643Q86TS7 DHX38-201ENST00000268482 4608 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
LINC00643Q86TS7 ANKZF1-201ENST00000323348 2579 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
LINC00643Q86TS7 AC090616.6-203ENST00000579186 1945 ntBASIC10.08□□□□□ -0.8
LINC00643Q86TS7 COL2A1-201ENST00000337299 4257 ntAPPRIS P3 TSL 1 (best) BASIC10.08□□□□□ -0.8
LINC00643Q86TS7 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC10.08□□□□□ -0.8
LINC00643Q86TS7 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC10.08□□□□□ -0.8
LINC00643Q86TS7 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
LINC00643Q86TS7 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC10.08□□□□□ -0.8
LINC00643Q86TS7 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
LINC00643Q86TS7 TREX2-204ENST00000370212 861 ntTSL 5 BASIC10.08□□□□□ -0.8
LINC00643Q86TS7 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC10.08□□□□□ -0.8
LINC00643Q86TS7 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC10.08□□□□□ -0.8
LINC00643Q86TS7 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC10.08□□□□□ -0.8
LINC00643Q86TS7 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC10.08□□□□□ -0.8
LINC00643Q86TS7 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC10.08□□□□□ -0.8
LINC00643Q86TS7 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC10.08□□□□□ -0.8
LINC00643Q86TS7 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC10.08□□□□□ -0.8
LINC00643Q86TS7 Z85996.1-201ENST00000494644 937 ntBASIC10.08□□□□□ -0.8
LINC00643Q86TS7 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC10.08□□□□□ -0.8
LINC00643Q86TS7 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
LINC00643Q86TS7 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC10.08□□□□□ -0.8
LINC00643Q86TS7 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
LINC00643Q86TS7 AC010536.3-201ENST00000620306 533 ntBASIC10.08□□□□□ -0.8
LINC00643Q86TS7 AC013268.1-206ENST00000638368 961 ntBASIC10.08□□□□□ -0.8
LINC00643Q86TS7 AC112229.1-201ENST00000639295 961 ntBASIC10.08□□□□□ -0.8
LINC00643Q86TS7 MYCNOS-205ENST00000641950 531 ntBASIC10.08□□□□□ -0.8
LINC00643Q86TS7 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC10.08□□□□□ -0.8
LINC00643Q86TS7 AL118506.1-201ENST00000601296 3082 ntBASIC10.08□□□□□ -0.8
LINC00643Q86TS7 PPP2R5E-201ENST00000337537 6659 ntAPPRIS P3 TSL 1 (best) BASIC10.08□□□□□ -0.8
LINC00643Q86TS7 NLRP2B-201ENST00000434992 3194 ntAPPRIS P1 BASIC10.08□□□□□ -0.8
LINC00643Q86TS7 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC10.08□□□□□ -0.8
LINC00643Q86TS7 KRT8P47-201ENST00000604727 1398 ntBASIC10.08□□□□□ -0.8
LINC00643Q86TS7 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
LINC00643Q86TS7 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC10.08□□□□□ -0.8
LINC00643Q86TS7 MEX3B-202ENST00000558133 4333 ntBASIC10.08□□□□□ -0.8
LINC00643Q86TS7 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
LINC00643Q86TS7 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
LINC00643Q86TS7 DUOX2-205ENST00000603300 6345 ntAPPRIS P2 TSL 1 (best) BASIC10.08□□□□□ -0.8
LINC00643Q86TS7 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
LINC00643Q86TS7 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
LINC00643Q86TS7 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC10.08□□□□□ -0.8
LINC00643Q86TS7 AC092127.1-201ENST00000567093 3455 ntBASIC10.08□□□□□ -0.8
LINC00643Q86TS7 ZNF641-201ENST00000301042 4544 ntTSL 5 BASIC10.08□□□□□ -0.8
LINC00643Q86TS7 PLA2G4F-202ENST00000397272 5587 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
LINC00643Q86TS7 RRBP1-201ENST00000246043 4737 ntAPPRIS ALT2 TSL 1 (best) BASIC10.08□□□□□ -0.8
LINC00643Q86TS7 FAM189A1-201ENST00000261275 4705 ntAPPRIS P1 TSL 5 BASIC10.08□□□□□ -0.8
LINC00643Q86TS7 TRHDE-AS1-201ENST00000426250 3684 ntTSL 5 BASIC10.08□□□□□ -0.8
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms