Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC10.69□□□□□ -0.7
VPS13DQ5THJ4 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC10.69□□□□□ -0.7
VPS13DQ5THJ4 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
VPS13DQ5THJ4 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC10.69□□□□□ -0.7
VPS13DQ5THJ4 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC10.69□□□□□ -0.7
VPS13DQ5THJ4 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC10.69□□□□□ -0.7
VPS13DQ5THJ4 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC10.69□□□□□ -0.7
VPS13DQ5THJ4 RERG-209ENST00000546331 1383 ntTSL 2 BASIC10.69□□□□□ -0.7
VPS13DQ5THJ4 AC134312.5-201ENST00000568031 1313 ntBASIC10.69□□□□□ -0.7
VPS13DQ5THJ4 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC10.69□□□□□ -0.7
VPS13DQ5THJ4 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC10.69□□□□□ -0.7
VPS13DQ5THJ4 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
VPS13DQ5THJ4 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
VPS13DQ5THJ4 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC10.69□□□□□ -0.7
VPS13DQ5THJ4 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC10.69□□□□□ -0.7
VPS13DQ5THJ4 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
VPS13DQ5THJ4 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 AC010328.2-201ENST00000597698 1111 ntBASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 CYP2AB1P-202ENST00000454440 1456 ntBASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 GRN-214ENST00000589265 1632 ntTSL 5 BASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 FAM21FP-201ENST00000426241 1131 ntBASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 AP006547.1-201ENST00000563435 692 ntBASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 AL138709.1-201ENST00000614840 1693 ntBASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 AC104457.1-201ENST00000401024 814 ntBASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 AC016700.1-201ENST00000429424 312 ntBASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 KRT18P43-201ENST00000469825 1281 ntBASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 AC079316.1-201ENST00000548397 411 ntBASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 MIR6727-201ENST00000620702 65 ntBASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 OS9-205ENST00000413095 1660 ntTSL 2 BASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 KRT8P35-201ENST00000483942 1338 ntBASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 AC253536.4-201ENST00000440539 267 ntBASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 AC006453.4-201ENST00000636949 1252 ntBASIC10.68□□□□□ -0.7
VPS13DQ5THJ4 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC10.67□□□□□ -0.7
VPS13DQ5THJ4 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC10.67□□□□□ -0.7
VPS13DQ5THJ4 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC10.67□□□□□ -0.7
VPS13DQ5THJ4 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
VPS13DQ5THJ4 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
VPS13DQ5THJ4 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
VPS13DQ5THJ4 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC10.67□□□□□ -0.7
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms