Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
USP39Q53GS9 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
USP39Q53GS9 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC16.5■□□□□ 0.23
USP39Q53GS9 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
USP39Q53GS9 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC16.5■□□□□ 0.23
USP39Q53GS9 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
USP39Q53GS9 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
USP39Q53GS9 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
USP39Q53GS9 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
USP39Q53GS9 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC16.5■□□□□ 0.23
USP39Q53GS9 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
USP39Q53GS9 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
USP39Q53GS9 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
USP39Q53GS9 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC16.5■□□□□ 0.23
USP39Q53GS9 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
USP39Q53GS9 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC16.5■□□□□ 0.23
USP39Q53GS9 AP006294.1-201ENST00000415407 339 ntBASIC16.5■□□□□ 0.23
USP39Q53GS9 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC16.5■□□□□ 0.23
USP39Q53GS9 RN7SL752P-201ENST00000463779 287 ntBASIC16.5■□□□□ 0.23
USP39Q53GS9 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC16.5■□□□□ 0.23
USP39Q53GS9 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
USP39Q53GS9 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
USP39Q53GS9 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC16.5■□□□□ 0.23
USP39Q53GS9 AL079307.3-201ENST00000556114 283 ntBASIC16.5■□□□□ 0.23
USP39Q53GS9 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC16.5■□□□□ 0.23
USP39Q53GS9 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC16.5■□□□□ 0.23
USP39Q53GS9 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
USP39Q53GS9 SIGLEC29P-201ENST00000599873 1114 ntBASIC16.5■□□□□ 0.23
USP39Q53GS9 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC16.5■□□□□ 0.23
USP39Q53GS9 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC16.5■□□□□ 0.23
USP39Q53GS9 AC004840.1-201ENST00000636359 365 ntBASIC16.5■□□□□ 0.23
USP39Q53GS9 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC16.5■□□□□ 0.23
USP39Q53GS9 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
USP39Q53GS9 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
USP39Q53GS9 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
USP39Q53GS9 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
USP39Q53GS9 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC16.5■□□□□ 0.23
USP39Q53GS9 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC16.5■□□□□ 0.23
USP39Q53GS9 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC16.5■□□□□ 0.23
USP39Q53GS9 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
USP39Q53GS9 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
USP39Q53GS9 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
USP39Q53GS9 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC16.49■□□□□ 0.23
USP39Q53GS9 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
USP39Q53GS9 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
USP39Q53GS9 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
USP39Q53GS9 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
USP39Q53GS9 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC16.49■□□□□ 0.23
USP39Q53GS9 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC16.49■□□□□ 0.23
USP39Q53GS9 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
USP39Q53GS9 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC16.49■□□□□ 0.23
USP39Q53GS9 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
USP39Q53GS9 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
USP39Q53GS9 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
USP39Q53GS9 PCDHB19P-201ENST00000570871 2371 ntBASIC16.49■□□□□ 0.23
USP39Q53GS9 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
USP39Q53GS9 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
USP39Q53GS9 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
USP39Q53GS9 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC16.49■□□□□ 0.23
USP39Q53GS9 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
USP39Q53GS9 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
USP39Q53GS9 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
USP39Q53GS9 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC16.49■□□□□ 0.23
USP39Q53GS9 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC16.49■□□□□ 0.23
USP39Q53GS9 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
USP39Q53GS9 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC16.49■□□□□ 0.23
USP39Q53GS9 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
USP39Q53GS9 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
USP39Q53GS9 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC16.49■□□□□ 0.23
USP39Q53GS9 IFT20-216ENST00000588477 774 ntTSL 5 BASIC16.49■□□□□ 0.23
USP39Q53GS9 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
USP39Q53GS9 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC16.49■□□□□ 0.23
USP39Q53GS9 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC16.49■□□□□ 0.23
USP39Q53GS9 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
USP39Q53GS9 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC16.49■□□□□ 0.23
USP39Q53GS9 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
USP39Q53GS9 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
USP39Q53GS9 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
USP39Q53GS9 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC16.49■□□□□ 0.23
USP39Q53GS9 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
USP39Q53GS9 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
USP39Q53GS9 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
USP39Q53GS9 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
USP39Q53GS9 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC16.49■□□□□ 0.23
USP39Q53GS9 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC16.49■□□□□ 0.23
USP39Q53GS9 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
USP39Q53GS9 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
USP39Q53GS9 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
USP39Q53GS9 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
USP39Q53GS9 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
USP39Q53GS9 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
USP39Q53GS9 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
USP39Q53GS9 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
USP39Q53GS9 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
USP39Q53GS9 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
USP39Q53GS9 TUBB8P12-201ENST00000308911 1335 ntBASIC16.48■□□□□ 0.23
USP39Q53GS9 TUBB7P-202ENST00000428444 1305 ntBASIC16.48■□□□□ 0.23
USP39Q53GS9 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
USP39Q53GS9 TUBB8P7-204ENST00000567960 1332 ntBASIC16.48■□□□□ 0.23
USP39Q53GS9 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms