Protein–RNA interactions for Protein: P62068

USP46, Ubiquitin carboxyl-terminal hydrolase 46, humanhuman

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP46P62068 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP46P62068 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC17.1■□□□□ 0.33
USP46P62068 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC17.1■□□□□ 0.33
USP46P62068 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC17.1■□□□□ 0.33
USP46P62068 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC17.1■□□□□ 0.33
USP46P62068 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
USP46P62068 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP46P62068 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
USP46P62068 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
USP46P62068 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP46P62068 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC17.1■□□□□ 0.33
USP46P62068 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP46P62068 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
USP46P62068 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
USP46P62068 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP46P62068 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP46P62068 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP46P62068 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP46P62068 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC17.1■□□□□ 0.33
USP46P62068 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
USP46P62068 RPL37AP1-201ENST00000412502 279 ntBASIC17.1■□□□□ 0.33
USP46P62068 AC241585.1-201ENST00000433527 519 ntBASIC17.1■□□□□ 0.33
USP46P62068 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC17.1■□□□□ 0.33
USP46P62068 RN7SL371P-201ENST00000578099 267 ntBASIC17.1■□□□□ 0.33
USP46P62068 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC17.1■□□□□ 0.33
USP46P62068 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP46P62068 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP46P62068 AL035456.1-201ENST00000456064 1369 ntBASIC17.1■□□□□ 0.33
USP46P62068 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP46P62068 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP46P62068 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP46P62068 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
USP46P62068 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC17.1■□□□□ 0.33
USP46P62068 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC17.1■□□□□ 0.33
USP46P62068 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP46P62068 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC17.1■□□□□ 0.33
USP46P62068 HYMAI-201ENST00000635591 3347 ntBASIC17.09■□□□□ 0.33
USP46P62068 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
USP46P62068 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC17.09■□□□□ 0.33
USP46P62068 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP46P62068 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP46P62068 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP46P62068 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
USP46P62068 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP46P62068 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC17.09■□□□□ 0.33
USP46P62068 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
USP46P62068 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP46P62068 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP46P62068 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
USP46P62068 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP46P62068 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
USP46P62068 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
USP46P62068 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP46P62068 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
USP46P62068 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC17.09■□□□□ 0.33
USP46P62068 MRPS18AP1-201ENST00000414458 589 ntBASIC17.09■□□□□ 0.33
USP46P62068 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
USP46P62068 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC17.09■□□□□ 0.33
USP46P62068 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC17.09■□□□□ 0.33
USP46P62068 LHX6-205ENST00000464484 666 ntTSL 2 BASIC17.09■□□□□ 0.33
USP46P62068 HLA-V-204ENST00000476601 1289 ntBASIC17.09■□□□□ 0.33
USP46P62068 CCDC74BP1-201ENST00000508880 1123 ntBASIC17.09■□□□□ 0.33
USP46P62068 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC17.09■□□□□ 0.33
USP46P62068 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP46P62068 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
USP46P62068 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
USP46P62068 GRAMD4P3-201ENST00000621665 1669 ntBASIC17.09■□□□□ 0.33
USP46P62068 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
USP46P62068 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC17.09■□□□□ 0.33
USP46P62068 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
USP46P62068 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
USP46P62068 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC17.09■□□□□ 0.33
USP46P62068 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP46P62068 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP46P62068 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP46P62068 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP46P62068 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
USP46P62068 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
USP46P62068 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
USP46P62068 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC17.08■□□□□ 0.33
USP46P62068 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC17.08■□□□□ 0.33
USP46P62068 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
USP46P62068 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC17.08■□□□□ 0.33
USP46P62068 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
USP46P62068 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
USP46P62068 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
USP46P62068 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC17.08■□□□□ 0.33
USP46P62068 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC17.08■□□□□ 0.33
USP46P62068 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
USP46P62068 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
USP46P62068 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
USP46P62068 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC17.08■□□□□ 0.33
USP46P62068 U82695.1-201ENST00000635752 1889 ntBASIC17.08■□□□□ 0.33
USP46P62068 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
USP46P62068 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC17.08■□□□□ 0.32
USP46P62068 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
USP46P62068 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
USP46P62068 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
USP46P62068 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC17.08■□□□□ 0.32
USP46P62068 KLK8-202ENST00000320838 456 ntTSL 5 BASIC17.08■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms