Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SOX2P48431 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SOX2P48431 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC14.38□□□□□ -0.11
SOX2P48431 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SOX2P48431 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SOX2P48431 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SOX2P48431 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SOX2P48431 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SOX2P48431 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
SOX2P48431 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SOX2P48431 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
SOX2P48431 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
SOX2P48431 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
SOX2P48431 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
SOX2P48431 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SOX2P48431 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC14.38□□□□□ -0.11
SOX2P48431 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
SOX2P48431 AC097376.2-205ENST00000610159 5334 ntBASIC14.38□□□□□ -0.11
SOX2P48431 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SOX2P48431 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC14.37□□□□□ -0.11
SOX2P48431 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SOX2P48431 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SOX2P48431 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC14.37□□□□□ -0.11
SOX2P48431 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SOX2P48431 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
SOX2P48431 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
SOX2P48431 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
SOX2P48431 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC14.37□□□□□ -0.11
SOX2P48431 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SOX2P48431 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC14.37□□□□□ -0.11
SOX2P48431 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
SOX2P48431 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
SOX2P48431 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC14.37□□□□□ -0.11
SOX2P48431 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SOX2P48431 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SOX2P48431 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC14.37□□□□□ -0.11
SOX2P48431 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SOX2P48431 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SOX2P48431 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC14.37□□□□□ -0.11
SOX2P48431 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC14.37□□□□□ -0.11
SOX2P48431 MIR648-201ENST00000385046 94 ntBASIC14.37□□□□□ -0.11
SOX2P48431 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC14.37□□□□□ -0.11
SOX2P48431 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC14.37□□□□□ -0.11
SOX2P48431 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC14.37□□□□□ -0.11
SOX2P48431 STARD13-205ENST00000439831 945 ntTSL 2 BASIC14.37□□□□□ -0.11
SOX2P48431 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC14.37□□□□□ -0.11
SOX2P48431 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC14.37□□□□□ -0.11
SOX2P48431 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC14.37□□□□□ -0.11
SOX2P48431 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC14.37□□□□□ -0.11
SOX2P48431 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC14.37□□□□□ -0.11
SOX2P48431 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC14.37□□□□□ -0.11
SOX2P48431 BSG-214ENST00000614867 960 ntTSL 3 BASIC14.37□□□□□ -0.11
SOX2P48431 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC14.37□□□□□ -0.11
SOX2P48431 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
SOX2P48431 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC14.37□□□□□ -0.11
SOX2P48431 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SOX2P48431 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
SOX2P48431 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
SOX2P48431 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC14.37□□□□□ -0.11
SOX2P48431 AC005622.1-201ENST00000636801 1703 ntBASIC14.37□□□□□ -0.11
SOX2P48431 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC14.37□□□□□ -0.11
SOX2P48431 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC14.37□□□□□ -0.11
SOX2P48431 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
SOX2P48431 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SOX2P48431 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC14.37□□□□□ -0.11
SOX2P48431 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC14.37□□□□□ -0.11
SOX2P48431 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC14.37□□□□□ -0.11
SOX2P48431 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC14.37□□□□□ -0.11
SOX2P48431 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SOX2P48431 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC14.37□□□□□ -0.11
SOX2P48431 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
SOX2P48431 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC14.37□□□□□ -0.11
SOX2P48431 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
SOX2P48431 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SOX2P48431 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
SOX2P48431 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SOX2P48431 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
SOX2P48431 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SOX2P48431 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
SOX2P48431 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
SOX2P48431 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC14.36□□□□□ -0.11
SOX2P48431 PAN3-AS1-201ENST00000563843 1351 ntBASIC14.36□□□□□ -0.11
SOX2P48431 TK2-221ENST00000620035 5060 ntTSL 2 BASIC14.36□□□□□ -0.11
SOX2P48431 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SOX2P48431 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC14.36□□□□□ -0.11
SOX2P48431 SLC9A3P2-201ENST00000447821 2021 ntBASIC14.36□□□□□ -0.11
SOX2P48431 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC14.36□□□□□ -0.11
SOX2P48431 AC022532.1-201ENST00000624563 1728 ntBASIC14.36□□□□□ -0.11
SOX2P48431 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SOX2P48431 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SOX2P48431 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SOX2P48431 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC14.36□□□□□ -0.11
SOX2P48431 PPT1-215ENST00000641471 2368 ntBASIC14.36□□□□□ -0.11
SOX2P48431 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
SOX2P48431 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SOX2P48431 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SOX2P48431 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
SOX2P48431 LSM5-204ENST00000409909 740 ntTSL 2 BASIC14.36□□□□□ -0.11
SOX2P48431 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SOX2P48431 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC14.36□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 69.6 ms