Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
RNF40O75150 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.41
RNF40O75150 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC17.64■□□□□ 0.41
RNF40O75150 MIR3197-201ENST00000582241 73 ntBASIC17.64■□□□□ 0.41
RNF40O75150 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC17.64■□□□□ 0.41
RNF40O75150 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
RNF40O75150 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
RNF40O75150 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
RNF40O75150 TNRC18P2-201ENST00000417666 2714 ntBASIC17.64■□□□□ 0.41
RNF40O75150 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
RNF40O75150 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
RNF40O75150 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC17.64■□□□□ 0.41
RNF40O75150 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC17.64■□□□□ 0.41
RNF40O75150 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
RNF40O75150 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
RNF40O75150 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
RNF40O75150 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
RNF40O75150 AC073347.1-201ENST00000421633 2643 ntBASIC17.64■□□□□ 0.41
RNF40O75150 PI4KAP1-204ENST00000612579 1703 ntBASIC17.64■□□□□ 0.41
RNF40O75150 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC17.64■□□□□ 0.41
RNF40O75150 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
RNF40O75150 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC17.64■□□□□ 0.41
RNF40O75150 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
RNF40O75150 AP002414.2-201ENST00000591780 3365 ntBASIC17.63■□□□□ 0.41
RNF40O75150 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RNF40O75150 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
RNF40O75150 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
RNF40O75150 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RNF40O75150 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC17.63■□□□□ 0.41
RNF40O75150 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
RNF40O75150 AL391256.1-201ENST00000443260 1855 ntBASIC17.63■□□□□ 0.41
RNF40O75150 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
RNF40O75150 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RNF40O75150 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
RNF40O75150 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
RNF40O75150 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
RNF40O75150 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RNF40O75150 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RNF40O75150 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RNF40O75150 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
RNF40O75150 AC002558.1-201ENST00000488906 803 ntBASIC17.63■□□□□ 0.41
RNF40O75150 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC17.63■□□□□ 0.41
RNF40O75150 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC17.63■□□□□ 0.41
RNF40O75150 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC17.63■□□□□ 0.41
RNF40O75150 AC023141.13-201ENST00000604991 943 ntBASIC17.63■□□□□ 0.41
RNF40O75150 AC007064.4-201ENST00000637740 555 ntBASIC17.63■□□□□ 0.41
RNF40O75150 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC17.63■□□□□ 0.41
RNF40O75150 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
RNF40O75150 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RNF40O75150 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC17.63■□□□□ 0.41
RNF40O75150 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC17.63■□□□□ 0.41
RNF40O75150 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC17.63■□□□□ 0.41
RNF40O75150 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
RNF40O75150 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC17.63■□□□□ 0.41
RNF40O75150 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RNF40O75150 AC006538.1-201ENST00000567905 1585 ntBASIC17.62■□□□□ 0.41
RNF40O75150 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RNF40O75150 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
RNF40O75150 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC17.62■□□□□ 0.41
RNF40O75150 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC17.62■□□□□ 0.41
RNF40O75150 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC17.62■□□□□ 0.41
RNF40O75150 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC17.62■□□□□ 0.41
RNF40O75150 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
RNF40O75150 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC17.62■□□□□ 0.41
RNF40O75150 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC17.62■□□□□ 0.41
RNF40O75150 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
RNF40O75150 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RNF40O75150 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC17.62■□□□□ 0.41
RNF40O75150 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC17.62■□□□□ 0.41
RNF40O75150 ACTG1P14-201ENST00000446382 1122 ntBASIC17.62■□□□□ 0.41
RNF40O75150 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
RNF40O75150 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
RNF40O75150 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC17.62■□□□□ 0.41
RNF40O75150 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC17.62■□□□□ 0.41
RNF40O75150 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC17.62■□□□□ 0.41
RNF40O75150 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
RNF40O75150 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC17.62■□□□□ 0.41
RNF40O75150 AC091812.2-201ENST00000619081 385 ntBASIC17.62■□□□□ 0.41
RNF40O75150 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC17.62■□□□□ 0.41
RNF40O75150 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
RNF40O75150 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
RNF40O75150 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC17.62■□□□□ 0.41
RNF40O75150 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
RNF40O75150 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC17.62■□□□□ 0.41
RNF40O75150 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RNF40O75150 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
RNF40O75150 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
RNF40O75150 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
RNF40O75150 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC17.62■□□□□ 0.41
RNF40O75150 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC17.62■□□□□ 0.41
RNF40O75150 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC17.62■□□□□ 0.41
RNF40O75150 STX3-203ENST00000529177 1571 ntTSL 2 BASIC17.62■□□□□ 0.41
RNF40O75150 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC17.62■□□□□ 0.41
RNF40O75150 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC17.61■□□□□ 0.41
RNF40O75150 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC17.61■□□□□ 0.41
RNF40O75150 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC17.61■□□□□ 0.41
RNF40O75150 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
RNF40O75150 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RNF40O75150 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RNF40O75150 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms