Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LDB3O75112 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LDB3O75112 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LDB3O75112 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
LDB3O75112 FER1L4-210ENST00000615531 5998 ntBASIC15.3■□□□□ 0.04
LDB3O75112 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
LDB3O75112 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
LDB3O75112 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
LDB3O75112 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC15.3■□□□□ 0.04
LDB3O75112 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LDB3O75112 CD81-202ENST00000381036 880 ntTSL 3 BASIC15.3■□□□□ 0.04
LDB3O75112 HLA-H-201ENST00000383620 1096 ntBASIC15.3■□□□□ 0.04
LDB3O75112 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LDB3O75112 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC15.3■□□□□ 0.04
LDB3O75112 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
LDB3O75112 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC15.3■□□□□ 0.04
LDB3O75112 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC15.3■□□□□ 0.04
LDB3O75112 ALG1L8P-201ENST00000533887 760 ntBASIC15.3■□□□□ 0.04
LDB3O75112 DAD1-205ENST00000543337 501 ntTSL 3 BASIC15.3■□□□□ 0.04
LDB3O75112 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC15.3■□□□□ 0.04
LDB3O75112 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LDB3O75112 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC15.3■□□□□ 0.04
LDB3O75112 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LDB3O75112 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
LDB3O75112 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
LDB3O75112 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC15.3■□□□□ 0.04
LDB3O75112 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
LDB3O75112 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LDB3O75112 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LDB3O75112 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC15.3■□□□□ 0.04
LDB3O75112 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LDB3O75112 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
LDB3O75112 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LDB3O75112 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC15.29■□□□□ 0.04
LDB3O75112 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
LDB3O75112 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LDB3O75112 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC15.29■□□□□ 0.04
LDB3O75112 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC15.29■□□□□ 0.04
LDB3O75112 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
LDB3O75112 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC15.29■□□□□ 0.04
LDB3O75112 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LDB3O75112 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
LDB3O75112 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LDB3O75112 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LDB3O75112 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LDB3O75112 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
LDB3O75112 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC15.29■□□□□ 0.04
LDB3O75112 FAM220BP-201ENST00000377689 816 ntBASIC15.29■□□□□ 0.04
LDB3O75112 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
LDB3O75112 TSEN15P1-201ENST00000423257 515 ntBASIC15.29■□□□□ 0.04
LDB3O75112 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC15.29■□□□□ 0.04
LDB3O75112 URGCP-206ENST00000446958 365 ntTSL 2 BASIC15.29■□□□□ 0.04
LDB3O75112 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC15.29■□□□□ 0.04
LDB3O75112 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC15.29■□□□□ 0.04
LDB3O75112 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
LDB3O75112 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
LDB3O75112 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
LDB3O75112 RARRES2P9-201ENST00000565168 469 ntBASIC15.29■□□□□ 0.04
LDB3O75112 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC15.29■□□□□ 0.04
LDB3O75112 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LDB3O75112 AL365330.1-201ENST00000607459 531 ntBASIC15.29■□□□□ 0.04
LDB3O75112 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC15.29■□□□□ 0.04
LDB3O75112 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LDB3O75112 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC15.29■□□□□ 0.04
LDB3O75112 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LDB3O75112 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
LDB3O75112 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
LDB3O75112 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
LDB3O75112 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
LDB3O75112 AC008741.2-201ENST00000612792 3115 ntBASIC15.29■□□□□ 0.04
LDB3O75112 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
LDB3O75112 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
LDB3O75112 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
LDB3O75112 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LDB3O75112 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LDB3O75112 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
LDB3O75112 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LDB3O75112 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
LDB3O75112 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC15.29■□□□□ 0.04
LDB3O75112 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC15.29■□□□□ 0.04
LDB3O75112 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC15.29■□□□□ 0.04
LDB3O75112 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
LDB3O75112 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LDB3O75112 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
LDB3O75112 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
LDB3O75112 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LDB3O75112 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
LDB3O75112 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC15.28■□□□□ 0.04
LDB3O75112 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
LDB3O75112 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
LDB3O75112 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LDB3O75112 AL139400.1-201ENST00000366220 510 ntBASIC15.28■□□□□ 0.04
LDB3O75112 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LDB3O75112 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
LDB3O75112 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC15.28■□□□□ 0.04
LDB3O75112 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC15.28■□□□□ 0.04
LDB3O75112 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC15.28■□□□□ 0.04
LDB3O75112 AC026150.2-201ENST00000564693 1156 ntBASIC15.28■□□□□ 0.04
LDB3O75112 AC061975.2-201ENST00000581722 295 ntBASIC15.28■□□□□ 0.04
LDB3O75112 AC024267.1-201ENST00000582320 895 ntBASIC15.28■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms