Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC20.14■□□□□ 0.81
CACNA1FO60840 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC20.14■□□□□ 0.81
CACNA1FO60840 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CACNA1FO60840 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CACNA1FO60840 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC20.14■□□□□ 0.81
CACNA1FO60840 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CACNA1FO60840 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CACNA1FO60840 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
CACNA1FO60840 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC20.14■□□□□ 0.81
CACNA1FO60840 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC20.14■□□□□ 0.81
CACNA1FO60840 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC20.14■□□□□ 0.81
CACNA1FO60840 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC20.14■□□□□ 0.81
CACNA1FO60840 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC20.14■□□□□ 0.81
CACNA1FO60840 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CACNA1FO60840 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CACNA1FO60840 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
CACNA1FO60840 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CACNA1FO60840 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CACNA1FO60840 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC20.13■□□□□ 0.81
CACNA1FO60840 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
CACNA1FO60840 RERG-209ENST00000546331 1383 ntTSL 2 BASIC20.13■□□□□ 0.81
CACNA1FO60840 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC20.13■□□□□ 0.81
CACNA1FO60840 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC20.13■□□□□ 0.81
CACNA1FO60840 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC20.13■□□□□ 0.81
CACNA1FO60840 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CACNA1FO60840 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC20.13■□□□□ 0.81
CACNA1FO60840 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CACNA1FO60840 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
CACNA1FO60840 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CACNA1FO60840 PKIG-203ENST00000372887 769 ntTSL 3 BASIC20.13■□□□□ 0.81
CACNA1FO60840 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CACNA1FO60840 AC074338.1-201ENST00000416825 156 ntBASIC20.13■□□□□ 0.81
CACNA1FO60840 AC098850.1-201ENST00000419919 790 ntBASIC20.13■□□□□ 0.81
CACNA1FO60840 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC20.13■□□□□ 0.81
CACNA1FO60840 AC000095.1-201ENST00000603208 874 ntBASIC20.13■□□□□ 0.81
CACNA1FO60840 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
CACNA1FO60840 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
CACNA1FO60840 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC20.13■□□□□ 0.81
CACNA1FO60840 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC20.13■□□□□ 0.81
CACNA1FO60840 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CACNA1FO60840 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CACNA1FO60840 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC20.13■□□□□ 0.81
CACNA1FO60840 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
CACNA1FO60840 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
CACNA1FO60840 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC20.12■□□□□ 0.81
CACNA1FO60840 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC20.12■□□□□ 0.81
CACNA1FO60840 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC20.12■□□□□ 0.81
CACNA1FO60840 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CACNA1FO60840 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC20.12■□□□□ 0.81
CACNA1FO60840 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CACNA1FO60840 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CACNA1FO60840 RPL13P2-201ENST00000440687 659 ntBASIC20.12■□□□□ 0.81
CACNA1FO60840 INGX-202ENST00000489074 768 ntBASIC20.12■□□□□ 0.81
CACNA1FO60840 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC20.12■□□□□ 0.81
CACNA1FO60840 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC20.12■□□□□ 0.81
CACNA1FO60840 RARRES2P5-201ENST00000564013 466 ntBASIC20.12■□□□□ 0.81
CACNA1FO60840 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CACNA1FO60840 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CACNA1FO60840 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
CACNA1FO60840 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CACNA1FO60840 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC20.12■□□□□ 0.81
CACNA1FO60840 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CACNA1FO60840 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CACNA1FO60840 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC20.12■□□□□ 0.81
CACNA1FO60840 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC20.12■□□□□ 0.81
CACNA1FO60840 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC20.12■□□□□ 0.81
CACNA1FO60840 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
CACNA1FO60840 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC20.12■□□□□ 0.81
CACNA1FO60840 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
CACNA1FO60840 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
CACNA1FO60840 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC20.11■□□□□ 0.81
CACNA1FO60840 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC20.11■□□□□ 0.81
CACNA1FO60840 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC20.11■□□□□ 0.81
CACNA1FO60840 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC20.11■□□□□ 0.81
CACNA1FO60840 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC20.11■□□□□ 0.81
CACNA1FO60840 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CACNA1FO60840 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CACNA1FO60840 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
CACNA1FO60840 SUPT20HL2-201ENST00000486479 2409 ntBASIC20.11■□□□□ 0.81
CACNA1FO60840 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC20.11■□□□□ 0.81
CACNA1FO60840 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CACNA1FO60840 AC018892.3-201ENST00000623986 2499 ntBASIC20.11■□□□□ 0.81
CACNA1FO60840 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CACNA1FO60840 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC20.11■□□□□ 0.81
CACNA1FO60840 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CACNA1FO60840 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CACNA1FO60840 CLK3P2-201ENST00000427566 1453 ntBASIC20.11■□□□□ 0.81
CACNA1FO60840 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC20.11■□□□□ 0.81
CACNA1FO60840 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC20.11■□□□□ 0.81
CACNA1FO60840 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
CACNA1FO60840 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC20.11■□□□□ 0.81
CACNA1FO60840 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CACNA1FO60840 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC20.1■□□□□ 0.81
CACNA1FO60840 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
CACNA1FO60840 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC20.1■□□□□ 0.81
CACNA1FO60840 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
CACNA1FO60840 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC20.1■□□□□ 0.81
CACNA1FO60840 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC20.1■□□□□ 0.81
CACNA1FO60840 LHX6-205ENST00000464484 666 ntTSL 2 BASIC20.1■□□□□ 0.81
CACNA1FO60840 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC20.1■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 57.8 ms