Protein–RNA interactions for Protein: O43679

LDB2, LIM domain-binding protein 2, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB2O43679 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LDB2O43679 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
LDB2O43679 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
LDB2O43679 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LDB2O43679 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
LDB2O43679 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC16.23■□□□□ 0.19
LDB2O43679 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LDB2O43679 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
LDB2O43679 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
LDB2O43679 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC16.23■□□□□ 0.19
LDB2O43679 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
LDB2O43679 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
LDB2O43679 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC16.23■□□□□ 0.19
LDB2O43679 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LDB2O43679 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
LDB2O43679 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
LDB2O43679 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LDB2O43679 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LDB2O43679 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LDB2O43679 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC16.22■□□□□ 0.19
LDB2O43679 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LDB2O43679 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
LDB2O43679 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
LDB2O43679 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC16.22■□□□□ 0.19
LDB2O43679 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC16.22■□□□□ 0.19
LDB2O43679 HLA-H-201ENST00000383620 1096 ntBASIC16.22■□□□□ 0.19
LDB2O43679 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC16.22■□□□□ 0.19
LDB2O43679 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LDB2O43679 FAM58DP-201ENST00000428076 619 ntBASIC16.22■□□□□ 0.19
LDB2O43679 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC16.22■□□□□ 0.19
LDB2O43679 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
LDB2O43679 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC16.22■□□□□ 0.19
LDB2O43679 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC16.22■□□□□ 0.19
LDB2O43679 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC16.22■□□□□ 0.19
LDB2O43679 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC16.22■□□□□ 0.19
LDB2O43679 CCND1-203ENST00000536559 553 ntTSL 3 BASIC16.22■□□□□ 0.19
LDB2O43679 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC16.22■□□□□ 0.19
LDB2O43679 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
LDB2O43679 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC16.22■□□□□ 0.19
LDB2O43679 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LDB2O43679 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC16.22■□□□□ 0.19
LDB2O43679 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LDB2O43679 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LDB2O43679 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC16.22■□□□□ 0.19
LDB2O43679 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
LDB2O43679 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
LDB2O43679 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
LDB2O43679 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC16.22■□□□□ 0.19
LDB2O43679 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LDB2O43679 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC16.22■□□□□ 0.19
LDB2O43679 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
LDB2O43679 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC16.21■□□□□ 0.19
LDB2O43679 AP3S2-216ENST00000617003 1561 ntBASIC16.21■□□□□ 0.19
LDB2O43679 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
LDB2O43679 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC16.21■□□□□ 0.19
LDB2O43679 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
LDB2O43679 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
LDB2O43679 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
LDB2O43679 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC16.21■□□□□ 0.19
LDB2O43679 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC16.21■□□□□ 0.19
LDB2O43679 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC16.21■□□□□ 0.19
LDB2O43679 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
LDB2O43679 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
LDB2O43679 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC16.21■□□□□ 0.19
LDB2O43679 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
LDB2O43679 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
LDB2O43679 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC16.21■□□□□ 0.19
LDB2O43679 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
LDB2O43679 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC16.21■□□□□ 0.19
LDB2O43679 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC16.21■□□□□ 0.19
LDB2O43679 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC16.21■□□□□ 0.19
LDB2O43679 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC16.21■□□□□ 0.19
LDB2O43679 AP000344.2-201ENST00000512987 629 ntBASIC16.21■□□□□ 0.19
LDB2O43679 RNA5SP410-201ENST00000516285 106 ntBASIC16.21■□□□□ 0.19
LDB2O43679 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC16.21■□□□□ 0.19
LDB2O43679 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC16.21■□□□□ 0.19
LDB2O43679 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC16.21■□□□□ 0.19
LDB2O43679 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC16.21■□□□□ 0.19
LDB2O43679 AC079781.4-201ENST00000641908 219 ntBASIC16.21■□□□□ 0.19
LDB2O43679 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC16.21■□□□□ 0.19
LDB2O43679 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.19
LDB2O43679 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
LDB2O43679 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
LDB2O43679 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
LDB2O43679 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
LDB2O43679 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
LDB2O43679 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
LDB2O43679 AP005117.1-202ENST00000581724 1908 ntBASIC16.21■□□□□ 0.19
LDB2O43679 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
LDB2O43679 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
LDB2O43679 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
LDB2O43679 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
LDB2O43679 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC16.21■□□□□ 0.18
LDB2O43679 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
LDB2O43679 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LDB2O43679 PAUPAR-201ENST00000630360 2965 ntBASIC16.2■□□□□ 0.18
LDB2O43679 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LDB2O43679 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
LDB2O43679 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LDB2O43679 STK24-203ENST00000397517 4578 ntTSL 2 BASIC16.2■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms