Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM38O00635 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM38O00635 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM38O00635 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC16.41■□□□□ 0.22
TRIM38O00635 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM38O00635 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC16.41■□□□□ 0.22
TRIM38O00635 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM38O00635 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC16.41■□□□□ 0.22
TRIM38O00635 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM38O00635 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC16.41■□□□□ 0.22
TRIM38O00635 PAUPAR-201ENST00000630360 2965 ntBASIC16.41■□□□□ 0.22
TRIM38O00635 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM38O00635 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM38O00635 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM38O00635 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM38O00635 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM38O00635 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
TRIM38O00635 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM38O00635 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM38O00635 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM38O00635 WASH6P-202ENST00000359512 1437 ntBASIC16.4■□□□□ 0.22
TRIM38O00635 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC16.4■□□□□ 0.22
TRIM38O00635 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC16.4■□□□□ 0.22
TRIM38O00635 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM38O00635 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM38O00635 MIR661-201ENST00000384842 89 ntBASIC16.4■□□□□ 0.22
TRIM38O00635 AC236430.1-201ENST00000402231 743 ntBASIC16.4■□□□□ 0.22
TRIM38O00635 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM38O00635 TREML5P-201ENST00000421694 576 ntBASIC16.4■□□□□ 0.22
TRIM38O00635 UGT1A2P-201ENST00000454886 866 ntBASIC16.4■□□□□ 0.22
TRIM38O00635 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC16.4■□□□□ 0.22
TRIM38O00635 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC16.4■□□□□ 0.22
TRIM38O00635 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC16.4■□□□□ 0.22
TRIM38O00635 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM38O00635 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
TRIM38O00635 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC16.4■□□□□ 0.22
TRIM38O00635 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC16.4■□□□□ 0.22
TRIM38O00635 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
TRIM38O00635 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
TRIM38O00635 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM38O00635 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM38O00635 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM38O00635 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC16.4■□□□□ 0.22
TRIM38O00635 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC16.4■□□□□ 0.22
TRIM38O00635 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.22
TRIM38O00635 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.22
TRIM38O00635 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC16.39■□□□□ 0.22
TRIM38O00635 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM38O00635 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
TRIM38O00635 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM38O00635 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM38O00635 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM38O00635 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM38O00635 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM38O00635 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM38O00635 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM38O00635 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM38O00635 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM38O00635 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM38O00635 RNU1-129P-201ENST00000384064 167 ntBASIC16.39■□□□□ 0.21
TRIM38O00635 BAD-202ENST00000394531 631 ntTSL 3 BASIC16.39■□□□□ 0.21
TRIM38O00635 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM38O00635 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC16.39■□□□□ 0.21
TRIM38O00635 HCG4-201ENST00000418983 998 ntBASIC16.39■□□□□ 0.21
TRIM38O00635 WBP2-203ENST00000433525 928 ntTSL 2 BASIC16.39■□□□□ 0.21
TRIM38O00635 TSPY16P-201ENST00000449843 468 ntBASIC16.39■□□□□ 0.21
TRIM38O00635 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC16.39■□□□□ 0.21
TRIM38O00635 MTRF1LP2-201ENST00000506027 1122 ntBASIC16.39■□□□□ 0.21
TRIM38O00635 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC16.39■□□□□ 0.21
TRIM38O00635 BAD-207ENST00000544785 525 ntTSL 3 BASIC16.39■□□□□ 0.21
TRIM38O00635 AC140878.1-201ENST00000565277 250 ntBASIC16.39■□□□□ 0.21
TRIM38O00635 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC16.39■□□□□ 0.21
TRIM38O00635 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM38O00635 U1.21-201ENST00000580816 167 ntBASIC16.39■□□□□ 0.21
TRIM38O00635 PRR29-209ENST00000582540 967 ntTSL 2 BASIC16.39■□□□□ 0.21
TRIM38O00635 RN7SL204P-201ENST00000582831 262 ntBASIC16.39■□□□□ 0.21
TRIM38O00635 WT1-AS_2.1-201ENST00000613208 137 ntBASIC16.39■□□□□ 0.21
TRIM38O00635 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC16.39■□□□□ 0.21
TRIM38O00635 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM38O00635 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM38O00635 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM38O00635 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
TRIM38O00635 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC16.39■□□□□ 0.21
TRIM38O00635 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM38O00635 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM38O00635 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC16.39■□□□□ 0.21
TRIM38O00635 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM38O00635 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC16.39■□□□□ 0.21
TRIM38O00635 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM38O00635 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
TRIM38O00635 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM38O00635 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM38O00635 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
TRIM38O00635 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
TRIM38O00635 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC16.38■□□□□ 0.21
TRIM38O00635 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
TRIM38O00635 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
TRIM38O00635 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRIM38O00635 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
TRIM38O00635 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms