Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SIX2Q9NPC8 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
SIX2Q9NPC8 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SIX2Q9NPC8 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC17.4■□□□□ 0.38
SIX2Q9NPC8 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SIX2Q9NPC8 LRRFIP1P1-201ENST00000498774 2246 ntBASIC17.4■□□□□ 0.38
SIX2Q9NPC8 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC17.4■□□□□ 0.38
SIX2Q9NPC8 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
SIX2Q9NPC8 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SIX2Q9NPC8 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC17.4■□□□□ 0.38
SIX2Q9NPC8 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC17.4■□□□□ 0.38
SIX2Q9NPC8 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SIX2Q9NPC8 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC17.4■□□□□ 0.38
SIX2Q9NPC8 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
SIX2Q9NPC8 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
SIX2Q9NPC8 LINC00554-201ENST00000564841 3011 ntBASIC17.39■□□□□ 0.38
SIX2Q9NPC8 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.38
SIX2Q9NPC8 AL691432.1-201ENST00000596308 1422 ntBASIC17.39■□□□□ 0.38
SIX2Q9NPC8 DKFZP434H168-201ENST00000567381 1905 ntBASIC17.39■□□□□ 0.37
SIX2Q9NPC8 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SIX2Q9NPC8 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SIX2Q9NPC8 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SIX2Q9NPC8 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SIX2Q9NPC8 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC17.39■□□□□ 0.37
SIX2Q9NPC8 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
SIX2Q9NPC8 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
SIX2Q9NPC8 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SIX2Q9NPC8 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SIX2Q9NPC8 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC17.39■□□□□ 0.37
SIX2Q9NPC8 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SIX2Q9NPC8 FAM220BP-201ENST00000377689 816 ntBASIC17.39■□□□□ 0.37
SIX2Q9NPC8 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC17.39■□□□□ 0.37
SIX2Q9NPC8 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC17.39■□□□□ 0.37
SIX2Q9NPC8 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC17.39■□□□□ 0.37
SIX2Q9NPC8 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC17.39■□□□□ 0.37
SIX2Q9NPC8 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
SIX2Q9NPC8 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC17.39■□□□□ 0.37
SIX2Q9NPC8 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC17.39■□□□□ 0.37
SIX2Q9NPC8 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC17.39■□□□□ 0.37
SIX2Q9NPC8 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC17.39■□□□□ 0.37
SIX2Q9NPC8 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC17.39■□□□□ 0.37
SIX2Q9NPC8 AC084121.4-201ENST00000641598 221 ntBASIC17.39■□□□□ 0.37
SIX2Q9NPC8 AF228730.8-201ENST00000642140 221 ntBASIC17.39■□□□□ 0.37
SIX2Q9NPC8 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SIX2Q9NPC8 FES-204ENST00000414248 2327 ntTSL 2 BASIC17.39■□□□□ 0.37
SIX2Q9NPC8 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
SIX2Q9NPC8 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
SIX2Q9NPC8 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
SIX2Q9NPC8 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC17.39■□□□□ 0.37
SIX2Q9NPC8 AC104640.1-201ENST00000562617 2109 ntBASIC17.39■□□□□ 0.37
SIX2Q9NPC8 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC17.39■□□□□ 0.37
SIX2Q9NPC8 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC17.39■□□□□ 0.37
SIX2Q9NPC8 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SIX2Q9NPC8 AC126177.1-201ENST00000547829 2218 ntBASIC17.39■□□□□ 0.37
SIX2Q9NPC8 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SIX2Q9NPC8 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SIX2Q9NPC8 AP003680.1-201ENST00000598970 3660 ntBASIC17.39■□□□□ 0.37
SIX2Q9NPC8 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SIX2Q9NPC8 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
SIX2Q9NPC8 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC17.38■□□□□ 0.37
SIX2Q9NPC8 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
SIX2Q9NPC8 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SIX2Q9NPC8 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SIX2Q9NPC8 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC17.38■□□□□ 0.37
SIX2Q9NPC8 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SIX2Q9NPC8 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC17.38■□□□□ 0.37
SIX2Q9NPC8 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SIX2Q9NPC8 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
SIX2Q9NPC8 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
SIX2Q9NPC8 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC17.38■□□□□ 0.37
SIX2Q9NPC8 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SIX2Q9NPC8 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SIX2Q9NPC8 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC17.38■□□□□ 0.37
SIX2Q9NPC8 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SIX2Q9NPC8 BNIP3P1-202ENST00000550043 1585 ntBASIC17.38■□□□□ 0.37
SIX2Q9NPC8 AC013268.4-201ENST00000637413 2228 ntBASIC17.38■□□□□ 0.37
SIX2Q9NPC8 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC17.38■□□□□ 0.37
SIX2Q9NPC8 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SIX2Q9NPC8 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SIX2Q9NPC8 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
SIX2Q9NPC8 PTMS-202ENST00000389462 773 ntTSL 2 BASIC17.38■□□□□ 0.37
SIX2Q9NPC8 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC17.38■□□□□ 0.37
SIX2Q9NPC8 HTR5BP-201ENST00000430851 1154 ntBASIC17.38■□□□□ 0.37
SIX2Q9NPC8 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC17.38■□□□□ 0.37
SIX2Q9NPC8 SPDYE11-202ENST00000450699 704 ntBASIC17.38■□□□□ 0.37
SIX2Q9NPC8 MDH2-205ENST00000461263 648 ntTSL 2 BASIC17.38■□□□□ 0.37
SIX2Q9NPC8 AC069335.1-201ENST00000489972 472 ntBASIC17.38■□□□□ 0.37
SIX2Q9NPC8 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SIX2Q9NPC8 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC17.38■□□□□ 0.37
SIX2Q9NPC8 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC17.38■□□□□ 0.37
SIX2Q9NPC8 COQ9-214ENST00000567933 882 ntTSL 3 BASIC17.38■□□□□ 0.37
SIX2Q9NPC8 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC17.38■□□□□ 0.37
SIX2Q9NPC8 SPDYE9P-201ENST00000570642 692 ntBASIC17.38■□□□□ 0.37
SIX2Q9NPC8 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC17.38■□□□□ 0.37
SIX2Q9NPC8 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC17.38■□□□□ 0.37
SIX2Q9NPC8 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC17.38■□□□□ 0.37
SIX2Q9NPC8 SPDYE10P-202ENST00000612005 668 ntBASIC17.38■□□□□ 0.37
SIX2Q9NPC8 SPDYE8P-202ENST00000612377 668 ntBASIC17.38■□□□□ 0.37
SIX2Q9NPC8 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
SIX2Q9NPC8 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC17.38■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms