Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
ERCC4Q92889 AC092850.2-201ENST00000623821 2697 ntBASIC18.52■□□□□ 0.55
ERCC4Q92889 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC18.52■□□□□ 0.55
ERCC4Q92889 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.55
ERCC4Q92889 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
ERCC4Q92889 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC18.52■□□□□ 0.55
ERCC4Q92889 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.55
ERCC4Q92889 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.55
ERCC4Q92889 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
ERCC4Q92889 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC18.52■□□□□ 0.55
ERCC4Q92889 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
ERCC4Q92889 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
ERCC4Q92889 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
ERCC4Q92889 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
ERCC4Q92889 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
ERCC4Q92889 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
ERCC4Q92889 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
ERCC4Q92889 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
ERCC4Q92889 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
ERCC4Q92889 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
ERCC4Q92889 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
ERCC4Q92889 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
ERCC4Q92889 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
ERCC4Q92889 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC18.51■□□□□ 0.55
ERCC4Q92889 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
ERCC4Q92889 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC18.51■□□□□ 0.55
ERCC4Q92889 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC18.51■□□□□ 0.55
ERCC4Q92889 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC18.51■□□□□ 0.55
ERCC4Q92889 ETFA-208ENST00000559602 792 ntTSL 3 BASIC18.51■□□□□ 0.55
ERCC4Q92889 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC18.51■□□□□ 0.55
ERCC4Q92889 AL049840.3-201ENST00000602669 611 ntBASIC18.51■□□□□ 0.55
ERCC4Q92889 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
ERCC4Q92889 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
ERCC4Q92889 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
ERCC4Q92889 AC126177.1-201ENST00000547829 2218 ntBASIC18.51■□□□□ 0.55
ERCC4Q92889 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
ERCC4Q92889 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
ERCC4Q92889 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC18.51■□□□□ 0.55
ERCC4Q92889 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
ERCC4Q92889 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
ERCC4Q92889 AC069224.1-201ENST00000566372 1715 ntBASIC18.51■□□□□ 0.55
ERCC4Q92889 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
ERCC4Q92889 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
ERCC4Q92889 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
ERCC4Q92889 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
ERCC4Q92889 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
ERCC4Q92889 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
ERCC4Q92889 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC18.5■□□□□ 0.55
ERCC4Q92889 AC104640.1-201ENST00000562617 2109 ntBASIC18.5■□□□□ 0.55
ERCC4Q92889 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
ERCC4Q92889 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC18.5■□□□□ 0.55
ERCC4Q92889 AC012569.1-201ENST00000591191 1524 ntBASIC18.5■□□□□ 0.55
ERCC4Q92889 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
ERCC4Q92889 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
ERCC4Q92889 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
ERCC4Q92889 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
ERCC4Q92889 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
ERCC4Q92889 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
ERCC4Q92889 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC18.5■□□□□ 0.55
ERCC4Q92889 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
ERCC4Q92889 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
ERCC4Q92889 HCG4-201ENST00000418983 998 ntBASIC18.5■□□□□ 0.55
ERCC4Q92889 AC079781.3-201ENST00000449110 356 ntBASIC18.5■□□□□ 0.55
ERCC4Q92889 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC18.5■□□□□ 0.55
ERCC4Q92889 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC18.5■□□□□ 0.55
ERCC4Q92889 AC105339.3-201ENST00000560043 636 ntBASIC18.5■□□□□ 0.55
ERCC4Q92889 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
ERCC4Q92889 AC117500.6-201ENST00000624871 588 ntBASIC18.5■□□□□ 0.55
ERCC4Q92889 AP001350.2-201ENST00000625104 1094 ntBASIC18.5■□□□□ 0.55
ERCC4Q92889 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
ERCC4Q92889 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC18.5■□□□□ 0.55
ERCC4Q92889 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
ERCC4Q92889 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC18.5■□□□□ 0.55
ERCC4Q92889 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
ERCC4Q92889 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC18.5■□□□□ 0.55
ERCC4Q92889 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
ERCC4Q92889 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
ERCC4Q92889 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC18.5■□□□□ 0.55
ERCC4Q92889 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
ERCC4Q92889 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
ERCC4Q92889 AC126755.1-201ENST00000525846 6405 ntBASIC18.49■□□□□ 0.55
ERCC4Q92889 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
ERCC4Q92889 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
ERCC4Q92889 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
ERCC4Q92889 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC18.49■□□□□ 0.55
ERCC4Q92889 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC18.49■□□□□ 0.55
ERCC4Q92889 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC18.49■□□□□ 0.55
ERCC4Q92889 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
ERCC4Q92889 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
ERCC4Q92889 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
ERCC4Q92889 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
ERCC4Q92889 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC18.49■□□□□ 0.55
ERCC4Q92889 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
ERCC4Q92889 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC18.49■□□□□ 0.55
ERCC4Q92889 MOK-208ENST00000519058 917 ntTSL 2 BASIC18.49■□□□□ 0.55
ERCC4Q92889 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC18.49■□□□□ 0.55
ERCC4Q92889 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC18.49■□□□□ 0.55
ERCC4Q92889 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
ERCC4Q92889 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
ERCC4Q92889 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC18.49■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms