Protein–RNA interactions for Protein: Q8TBC3

SHKBP1, SH3KBP1-binding protein 1, humanhuman

Predictions only

Length 707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1Q8TBC3 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
SHKBP1Q8TBC3 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
SHKBP1Q8TBC3 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SHKBP1Q8TBC3 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC17.07■□□□□ 0.32
SHKBP1Q8TBC3 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SHKBP1Q8TBC3 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC17.07■□□□□ 0.32
SHKBP1Q8TBC3 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SHKBP1Q8TBC3 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
SHKBP1Q8TBC3 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
SHKBP1Q8TBC3 GPAA1P2-202ENST00000606848 1787 ntBASIC17.07■□□□□ 0.32
SHKBP1Q8TBC3 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SHKBP1Q8TBC3 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC17.07■□□□□ 0.32
SHKBP1Q8TBC3 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SHKBP1Q8TBC3 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
SHKBP1Q8TBC3 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC17.07■□□□□ 0.32
SHKBP1Q8TBC3 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
SHKBP1Q8TBC3 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC17.07■□□□□ 0.32
SHKBP1Q8TBC3 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SHKBP1Q8TBC3 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SHKBP1Q8TBC3 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
SHKBP1Q8TBC3 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SHKBP1Q8TBC3 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
SHKBP1Q8TBC3 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SHKBP1Q8TBC3 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC17.06■□□□□ 0.32
SHKBP1Q8TBC3 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SHKBP1Q8TBC3 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SHKBP1Q8TBC3 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC17.06■□□□□ 0.32
SHKBP1Q8TBC3 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SHKBP1Q8TBC3 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
SHKBP1Q8TBC3 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC17.06■□□□□ 0.32
SHKBP1Q8TBC3 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
SHKBP1Q8TBC3 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC17.06■□□□□ 0.32
SHKBP1Q8TBC3 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SHKBP1Q8TBC3 RPS19-201ENST00000221975 500 ntTSL 3 BASIC17.06■□□□□ 0.32
SHKBP1Q8TBC3 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SHKBP1Q8TBC3 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC17.06■□□□□ 0.32
SHKBP1Q8TBC3 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SHKBP1Q8TBC3 RN7SL692P-201ENST00000464677 288 ntBASIC17.06■□□□□ 0.32
SHKBP1Q8TBC3 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC17.06■□□□□ 0.32
SHKBP1Q8TBC3 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
SHKBP1Q8TBC3 SSH2-210ENST00000582084 560 ntTSL 3 BASIC17.06■□□□□ 0.32
SHKBP1Q8TBC3 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC17.06■□□□□ 0.32
SHKBP1Q8TBC3 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC17.06■□□□□ 0.32
SHKBP1Q8TBC3 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
SHKBP1Q8TBC3 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC17.06■□□□□ 0.32
SHKBP1Q8TBC3 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC17.06■□□□□ 0.32
SHKBP1Q8TBC3 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC17.06■□□□□ 0.32
SHKBP1Q8TBC3 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
SHKBP1Q8TBC3 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC17.06■□□□□ 0.32
SHKBP1Q8TBC3 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SHKBP1Q8TBC3 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SHKBP1Q8TBC3 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SHKBP1Q8TBC3 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SHKBP1Q8TBC3 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SHKBP1Q8TBC3 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SHKBP1Q8TBC3 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
SHKBP1Q8TBC3 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC17.06■□□□□ 0.32
SHKBP1Q8TBC3 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SHKBP1Q8TBC3 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC17.05■□□□□ 0.32
SHKBP1Q8TBC3 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SHKBP1Q8TBC3 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
SHKBP1Q8TBC3 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SHKBP1Q8TBC3 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
SHKBP1Q8TBC3 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
SHKBP1Q8TBC3 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC17.05■□□□□ 0.32
SHKBP1Q8TBC3 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
SHKBP1Q8TBC3 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SHKBP1Q8TBC3 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC17.05■□□□□ 0.32
SHKBP1Q8TBC3 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
SHKBP1Q8TBC3 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
SHKBP1Q8TBC3 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
SHKBP1Q8TBC3 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
SHKBP1Q8TBC3 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
SHKBP1Q8TBC3 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC17.05■□□□□ 0.32
SHKBP1Q8TBC3 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
SHKBP1Q8TBC3 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SHKBP1Q8TBC3 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
SHKBP1Q8TBC3 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SHKBP1Q8TBC3 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC17.05■□□□□ 0.32
SHKBP1Q8TBC3 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC17.05■□□□□ 0.32
SHKBP1Q8TBC3 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC17.05■□□□□ 0.32
SHKBP1Q8TBC3 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC17.05■□□□□ 0.32
SHKBP1Q8TBC3 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
SHKBP1Q8TBC3 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC17.05■□□□□ 0.32
SHKBP1Q8TBC3 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC17.05■□□□□ 0.32
SHKBP1Q8TBC3 RNA5-8SN1-201ENST00000610460 153 ntBASIC17.05■□□□□ 0.32
SHKBP1Q8TBC3 RNA5-8SN5-202ENST00000612463 153 ntBASIC17.05■□□□□ 0.32
SHKBP1Q8TBC3 RNA5-8SN4-201ENST00000613359 153 ntBASIC17.05■□□□□ 0.32
SHKBP1Q8TBC3 RNA5-8SN5-201ENST00000619471 153 ntBASIC17.05■□□□□ 0.32
SHKBP1Q8TBC3 SRP9-204ENST00000619790 377 ntTSL 2 BASIC17.05■□□□□ 0.32
SHKBP1Q8TBC3 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
SHKBP1Q8TBC3 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
SHKBP1Q8TBC3 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SHKBP1Q8TBC3 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SHKBP1Q8TBC3 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SHKBP1Q8TBC3 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SHKBP1Q8TBC3 HYMAI-201ENST00000635591 3347 ntBASIC17.05■□□□□ 0.32
SHKBP1Q8TBC3 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
SHKBP1Q8TBC3 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC17.05■□□□□ 0.32
SHKBP1Q8TBC3 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms