Protein–RNA interactions for Protein: Q7Z3Y7

KRT28, Keratin, type I cytoskeletal 28, humanhuman

Predictions only

Length 464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT28Q7Z3Y7 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
KRT28Q7Z3Y7 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
KRT28Q7Z3Y7 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC21.69■■□□□ 1.06
KRT28Q7Z3Y7 AL021578.1-201ENST00000613646 709 ntBASIC21.69■■□□□ 1.06
KRT28Q7Z3Y7 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
KRT28Q7Z3Y7 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC21.69■■□□□ 1.06
KRT28Q7Z3Y7 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC21.69■■□□□ 1.06
KRT28Q7Z3Y7 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
KRT28Q7Z3Y7 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
KRT28Q7Z3Y7 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
KRT28Q7Z3Y7 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
KRT28Q7Z3Y7 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
KRT28Q7Z3Y7 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
KRT28Q7Z3Y7 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
KRT28Q7Z3Y7 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
KRT28Q7Z3Y7 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC21.69■■□□□ 1.06
KRT28Q7Z3Y7 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC21.69■■□□□ 1.06
KRT28Q7Z3Y7 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
KRT28Q7Z3Y7 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
KRT28Q7Z3Y7 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
KRT28Q7Z3Y7 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC21.68■■□□□ 1.06
KRT28Q7Z3Y7 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
KRT28Q7Z3Y7 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
KRT28Q7Z3Y7 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC21.68■■□□□ 1.06
KRT28Q7Z3Y7 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC21.68■■□□□ 1.06
KRT28Q7Z3Y7 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
KRT28Q7Z3Y7 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC21.68■■□□□ 1.06
KRT28Q7Z3Y7 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
KRT28Q7Z3Y7 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC21.68■■□□□ 1.06
KRT28Q7Z3Y7 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
KRT28Q7Z3Y7 IGHJ2P-201ENST00000454480 60 ntBASIC21.68■■□□□ 1.06
KRT28Q7Z3Y7 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC21.68■■□□□ 1.06
KRT28Q7Z3Y7 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC21.68■■□□□ 1.06
KRT28Q7Z3Y7 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC21.68■■□□□ 1.06
KRT28Q7Z3Y7 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
KRT28Q7Z3Y7 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC21.68■■□□□ 1.06
KRT28Q7Z3Y7 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC21.68■■□□□ 1.06
KRT28Q7Z3Y7 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
KRT28Q7Z3Y7 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC21.68■■□□□ 1.06
KRT28Q7Z3Y7 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
KRT28Q7Z3Y7 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
KRT28Q7Z3Y7 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
KRT28Q7Z3Y7 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
KRT28Q7Z3Y7 AC141586.5-201ENST00000624546 2050 ntBASIC21.68■■□□□ 1.06
KRT28Q7Z3Y7 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
KRT28Q7Z3Y7 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
KRT28Q7Z3Y7 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
KRT28Q7Z3Y7 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
KRT28Q7Z3Y7 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC21.67■■□□□ 1.06
KRT28Q7Z3Y7 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC21.67■■□□□ 1.06
KRT28Q7Z3Y7 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
KRT28Q7Z3Y7 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC21.67■■□□□ 1.06
KRT28Q7Z3Y7 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
KRT28Q7Z3Y7 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
KRT28Q7Z3Y7 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
KRT28Q7Z3Y7 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
KRT28Q7Z3Y7 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
KRT28Q7Z3Y7 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
KRT28Q7Z3Y7 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
KRT28Q7Z3Y7 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC21.67■■□□□ 1.06
KRT28Q7Z3Y7 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC21.67■■□□□ 1.06
KRT28Q7Z3Y7 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC21.67■■□□□ 1.06
KRT28Q7Z3Y7 AC104306.2-201ENST00000451877 341 ntBASIC21.67■■□□□ 1.06
KRT28Q7Z3Y7 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC21.67■■□□□ 1.06
KRT28Q7Z3Y7 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC21.67■■□□□ 1.06
KRT28Q7Z3Y7 ZFR2-208ENST00000592398 532 ntTSL 5 BASIC21.67■■□□□ 1.06
KRT28Q7Z3Y7 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
KRT28Q7Z3Y7 AC106872.11-201ENST00000605838 421 ntBASIC21.67■■□□□ 1.06
KRT28Q7Z3Y7 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC21.67■■□□□ 1.06
KRT28Q7Z3Y7 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
KRT28Q7Z3Y7 LARP4-220ENST00000615080 856 ntTSL 5 BASIC21.67■■□□□ 1.06
KRT28Q7Z3Y7 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
KRT28Q7Z3Y7 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
KRT28Q7Z3Y7 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC21.67■■□□□ 1.06
KRT28Q7Z3Y7 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
KRT28Q7Z3Y7 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
KRT28Q7Z3Y7 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC21.66■■□□□ 1.06
KRT28Q7Z3Y7 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
KRT28Q7Z3Y7 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
KRT28Q7Z3Y7 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
KRT28Q7Z3Y7 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
KRT28Q7Z3Y7 C2orf27AP3-201ENST00000434123 579 ntBASIC21.66■■□□□ 1.06
KRT28Q7Z3Y7 SLED1-202ENST00000512051 380 ntBASIC21.66■■□□□ 1.06
KRT28Q7Z3Y7 AC023310.1-201ENST00000554836 735 ntBASIC21.66■■□□□ 1.06
KRT28Q7Z3Y7 RN7SL190P-201ENST00000582519 257 ntBASIC21.66■■□□□ 1.06
KRT28Q7Z3Y7 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
KRT28Q7Z3Y7 PRKN-211ENST00000615065 261 ntTSL 5 BASIC21.66■■□□□ 1.06
KRT28Q7Z3Y7 AL354718.3-201ENST00000616414 581 ntBASIC21.66■■□□□ 1.06
KRT28Q7Z3Y7 CR382287.1-201ENST00000623954 586 ntBASIC21.66■■□□□ 1.06
KRT28Q7Z3Y7 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
KRT28Q7Z3Y7 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
KRT28Q7Z3Y7 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC21.66■■□□□ 1.06
KRT28Q7Z3Y7 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
KRT28Q7Z3Y7 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC21.66■■□□□ 1.06
KRT28Q7Z3Y7 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC21.65■■□□□ 1.06
KRT28Q7Z3Y7 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
KRT28Q7Z3Y7 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC21.65■■□□□ 1.06
KRT28Q7Z3Y7 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
KRT28Q7Z3Y7 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC21.65■■□□□ 1.06
KRT28Q7Z3Y7 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms