Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
USP54Q70EL1 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
USP54Q70EL1 MIR1247-201ENST00000408206 136 ntBASIC21.19■□□□□ 0.98
USP54Q70EL1 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
USP54Q70EL1 AGGF1P2-201ENST00000426656 2106 ntBASIC21.19■□□□□ 0.98
USP54Q70EL1 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC21.19■□□□□ 0.98
USP54Q70EL1 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC21.19■□□□□ 0.98
USP54Q70EL1 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
USP54Q70EL1 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
USP54Q70EL1 GPX4-206ENST00000588919 803 ntTSL 2 BASIC21.19■□□□□ 0.98
USP54Q70EL1 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC21.19■□□□□ 0.98
USP54Q70EL1 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
USP54Q70EL1 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC21.19■□□□□ 0.98
USP54Q70EL1 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
USP54Q70EL1 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
USP54Q70EL1 TK1-203ENST00000588734 1681 ntTSL 2 BASIC21.19■□□□□ 0.98
USP54Q70EL1 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC21.19■□□□□ 0.98
USP54Q70EL1 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
USP54Q70EL1 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC21.19■□□□□ 0.98
USP54Q70EL1 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC21.19■□□□□ 0.98
USP54Q70EL1 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC21.19■□□□□ 0.98
USP54Q70EL1 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
USP54Q70EL1 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
USP54Q70EL1 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
USP54Q70EL1 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC21.19■□□□□ 0.98
USP54Q70EL1 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC21.19■□□□□ 0.98
USP54Q70EL1 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
USP54Q70EL1 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
USP54Q70EL1 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
USP54Q70EL1 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC21.18■□□□□ 0.98
USP54Q70EL1 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC21.18■□□□□ 0.98
USP54Q70EL1 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC21.18■□□□□ 0.98
USP54Q70EL1 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
USP54Q70EL1 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
USP54Q70EL1 FLJ38576-201ENST00000623820 2459 ntBASIC21.18■□□□□ 0.98
USP54Q70EL1 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC21.18■□□□□ 0.98
USP54Q70EL1 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC21.18■□□□□ 0.98
USP54Q70EL1 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
USP54Q70EL1 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC21.18■□□□□ 0.98
USP54Q70EL1 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC21.18■□□□□ 0.98
USP54Q70EL1 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
USP54Q70EL1 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
USP54Q70EL1 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC21.18■□□□□ 0.98
USP54Q70EL1 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
USP54Q70EL1 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC21.18■□□□□ 0.98
USP54Q70EL1 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
USP54Q70EL1 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
USP54Q70EL1 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC21.18■□□□□ 0.98
USP54Q70EL1 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
USP54Q70EL1 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
USP54Q70EL1 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
USP54Q70EL1 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC21.18■□□□□ 0.98
USP54Q70EL1 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
USP54Q70EL1 OLR1-203ENST00000432556 950 ntTSL 2 BASIC21.18■□□□□ 0.98
USP54Q70EL1 AC009486.1-201ENST00000569860 813 ntBASIC21.18■□□□□ 0.98
USP54Q70EL1 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC21.18■□□□□ 0.98
USP54Q70EL1 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC21.18■□□□□ 0.98
USP54Q70EL1 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
USP54Q70EL1 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
USP54Q70EL1 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
USP54Q70EL1 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
USP54Q70EL1 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
USP54Q70EL1 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC21.17■□□□□ 0.98
USP54Q70EL1 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
USP54Q70EL1 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
USP54Q70EL1 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
USP54Q70EL1 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
USP54Q70EL1 AC026954.1-201ENST00000429771 1293 ntBASIC21.17■□□□□ 0.98
USP54Q70EL1 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC21.17■□□□□ 0.98
USP54Q70EL1 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC21.17■□□□□ 0.98
USP54Q70EL1 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC21.17■□□□□ 0.98
USP54Q70EL1 MIR6869-201ENST00000619434 62 ntBASIC21.17■□□□□ 0.98
USP54Q70EL1 AC134312.5-201ENST00000568031 1313 ntBASIC21.17■□□□□ 0.98
USP54Q70EL1 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
USP54Q70EL1 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
USP54Q70EL1 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC21.17■□□□□ 0.98
USP54Q70EL1 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC21.17■□□□□ 0.98
USP54Q70EL1 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC21.17■□□□□ 0.98
USP54Q70EL1 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
USP54Q70EL1 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
USP54Q70EL1 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC21.17■□□□□ 0.98
USP54Q70EL1 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
USP54Q70EL1 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC21.17■□□□□ 0.98
USP54Q70EL1 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
USP54Q70EL1 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
USP54Q70EL1 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
USP54Q70EL1 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
USP54Q70EL1 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
USP54Q70EL1 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC21.16■□□□□ 0.98
USP54Q70EL1 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
USP54Q70EL1 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
USP54Q70EL1 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
USP54Q70EL1 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
USP54Q70EL1 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC21.16■□□□□ 0.98
USP54Q70EL1 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
USP54Q70EL1 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC21.16■□□□□ 0.98
USP54Q70EL1 AC016694.1-201ENST00000434179 700 ntBASIC21.16■□□□□ 0.98
USP54Q70EL1 ACTBP11-201ENST00000436287 1126 ntBASIC21.16■□□□□ 0.98
USP54Q70EL1 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC21.16■□□□□ 0.98
USP54Q70EL1 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC21.16■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms