Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC20.18■□□□□ 0.82
RC3H1Q5TC82 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
RC3H1Q5TC82 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
RC3H1Q5TC82 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC20.18■□□□□ 0.82
RC3H1Q5TC82 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
RC3H1Q5TC82 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC20.18■□□□□ 0.82
RC3H1Q5TC82 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
RC3H1Q5TC82 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
RC3H1Q5TC82 REXO1L8P-201ENST00000604378 1897 ntBASIC20.18■□□□□ 0.82
RC3H1Q5TC82 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC20.17■□□□□ 0.82
RC3H1Q5TC82 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
RC3H1Q5TC82 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC20.17■□□□□ 0.82
RC3H1Q5TC82 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC20.17■□□□□ 0.82
RC3H1Q5TC82 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
RC3H1Q5TC82 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC20.17■□□□□ 0.82
RC3H1Q5TC82 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
RC3H1Q5TC82 TEX30-203ENST00000376022 828 ntTSL 2 BASIC20.17■□□□□ 0.82
RC3H1Q5TC82 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC20.17■□□□□ 0.82
RC3H1Q5TC82 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC20.17■□□□□ 0.82
RC3H1Q5TC82 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
RC3H1Q5TC82 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
RC3H1Q5TC82 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC20.17■□□□□ 0.82
RC3H1Q5TC82 AC026410.3-201ENST00000514280 936 ntBASIC20.17■□□□□ 0.82
RC3H1Q5TC82 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC20.17■□□□□ 0.82
RC3H1Q5TC82 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC20.17■□□□□ 0.82
RC3H1Q5TC82 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC20.17■□□□□ 0.82
RC3H1Q5TC82 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RC3H1Q5TC82 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
RC3H1Q5TC82 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
RC3H1Q5TC82 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RC3H1Q5TC82 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC20.17■□□□□ 0.82
RC3H1Q5TC82 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
RC3H1Q5TC82 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RC3H1Q5TC82 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RC3H1Q5TC82 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
RC3H1Q5TC82 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RC3H1Q5TC82 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RC3H1Q5TC82 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RC3H1Q5TC82 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC20.17■□□□□ 0.82
RC3H1Q5TC82 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC20.16■□□□□ 0.82
RC3H1Q5TC82 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC20.16■□□□□ 0.82
RC3H1Q5TC82 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC20.16■□□□□ 0.82
RC3H1Q5TC82 HLA-A-202ENST00000376806 1854 ntBASIC20.16■□□□□ 0.82
RC3H1Q5TC82 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC20.16■□□□□ 0.82
RC3H1Q5TC82 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC20.16■□□□□ 0.82
RC3H1Q5TC82 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
RC3H1Q5TC82 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
RC3H1Q5TC82 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RC3H1Q5TC82 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
RC3H1Q5TC82 AGER-203ENST00000375065 665 ntTSL 2 BASIC20.16■□□□□ 0.82
RC3H1Q5TC82 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
RC3H1Q5TC82 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC20.16■□□□□ 0.82
RC3H1Q5TC82 RIT1-205ENST00000539040 919 ntTSL 2 BASIC20.16■□□□□ 0.82
RC3H1Q5TC82 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
RC3H1Q5TC82 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC20.16■□□□□ 0.82
RC3H1Q5TC82 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC20.16■□□□□ 0.82
RC3H1Q5TC82 AC091271.1-201ENST00000611877 1162 ntBASIC20.16■□□□□ 0.82
RC3H1Q5TC82 LARP4-220ENST00000615080 856 ntTSL 5 BASIC20.16■□□□□ 0.82
RC3H1Q5TC82 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
RC3H1Q5TC82 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC20.16■□□□□ 0.82
RC3H1Q5TC82 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
RC3H1Q5TC82 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC20.16■□□□□ 0.82
RC3H1Q5TC82 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC20.16■□□□□ 0.82
RC3H1Q5TC82 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
RC3H1Q5TC82 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RC3H1Q5TC82 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
RC3H1Q5TC82 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
RC3H1Q5TC82 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC20.16■□□□□ 0.82
RC3H1Q5TC82 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC20.16■□□□□ 0.82
RC3H1Q5TC82 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
RC3H1Q5TC82 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC20.15■□□□□ 0.82
RC3H1Q5TC82 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
RC3H1Q5TC82 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RC3H1Q5TC82 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
RC3H1Q5TC82 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC20.15■□□□□ 0.82
RC3H1Q5TC82 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
RC3H1Q5TC82 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
RC3H1Q5TC82 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC20.15■□□□□ 0.82
RC3H1Q5TC82 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
RC3H1Q5TC82 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC20.15■□□□□ 0.82
RC3H1Q5TC82 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC20.15■□□□□ 0.82
RC3H1Q5TC82 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC20.15■□□□□ 0.82
RC3H1Q5TC82 FAM86HP-204ENST00000513466 959 ntBASIC20.15■□□□□ 0.82
RC3H1Q5TC82 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC20.15■□□□□ 0.82
RC3H1Q5TC82 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC20.15■□□□□ 0.82
RC3H1Q5TC82 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC20.15■□□□□ 0.82
RC3H1Q5TC82 HNRNPUP1-201ENST00000554987 333 ntBASIC20.15■□□□□ 0.82
RC3H1Q5TC82 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC20.15■□□□□ 0.82
RC3H1Q5TC82 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC20.15■□□□□ 0.82
RC3H1Q5TC82 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC20.15■□□□□ 0.82
RC3H1Q5TC82 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RC3H1Q5TC82 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
RC3H1Q5TC82 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RC3H1Q5TC82 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
RC3H1Q5TC82 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
RC3H1Q5TC82 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
RC3H1Q5TC82 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
RC3H1Q5TC82 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
RC3H1Q5TC82 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RC3H1Q5TC82 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms