Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
CCDC58Q4VC31 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC58Q4VC31 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC58Q4VC31 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC58Q4VC31 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC58Q4VC31 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC58Q4VC31 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC58Q4VC31 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC58Q4VC31 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC14.64□□□□□ -0.07
CCDC58Q4VC31 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
CCDC58Q4VC31 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC58Q4VC31 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC58Q4VC31 GUK1-204ENST00000366721 689 ntTSL 3 BASIC14.64□□□□□ -0.07
CCDC58Q4VC31 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC58Q4VC31 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
CCDC58Q4VC31 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
CCDC58Q4VC31 AL031133.1-201ENST00000406807 723 ntBASIC14.64□□□□□ -0.07
CCDC58Q4VC31 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC58Q4VC31 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC14.64□□□□□ -0.07
CCDC58Q4VC31 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC14.64□□□□□ -0.07
CCDC58Q4VC31 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC14.64□□□□□ -0.07
CCDC58Q4VC31 LINC02447-202ENST00000501888 2146 ntBASIC14.64□□□□□ -0.07
CCDC58Q4VC31 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC14.64□□□□□ -0.07
CCDC58Q4VC31 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC58Q4VC31 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC14.64□□□□□ -0.07
CCDC58Q4VC31 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC14.64□□□□□ -0.07
CCDC58Q4VC31 AC010654.1-201ENST00000615722 808 ntBASIC14.64□□□□□ -0.07
CCDC58Q4VC31 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
CCDC58Q4VC31 AC066615.1-201ENST00000640911 628 ntBASIC14.64□□□□□ -0.07
CCDC58Q4VC31 AF228730.7-201ENST00000641842 219 ntBASIC14.64□□□□□ -0.07
CCDC58Q4VC31 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
CCDC58Q4VC31 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC58Q4VC31 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC58Q4VC31 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC58Q4VC31 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC58Q4VC31 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC58Q4VC31 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC58Q4VC31 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
CCDC58Q4VC31 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC14.64□□□□□ -0.07
CCDC58Q4VC31 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC58Q4VC31 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
CCDC58Q4VC31 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC58Q4VC31 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC58Q4VC31 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC14.64□□□□□ -0.07
CCDC58Q4VC31 RUFY1-202ENST00000393438 2454 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC58Q4VC31 AC013268.4-201ENST00000637413 2228 ntBASIC14.64□□□□□ -0.07
CCDC58Q4VC31 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC58Q4VC31 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC58Q4VC31 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC58Q4VC31 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC14.63□□□□□ -0.07
CCDC58Q4VC31 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC58Q4VC31 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC58Q4VC31 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC14.63□□□□□ -0.07
CCDC58Q4VC31 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC58Q4VC31 REXO1L8P-201ENST00000604378 1897 ntBASIC14.63□□□□□ -0.07
CCDC58Q4VC31 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC14.63□□□□□ -0.07
CCDC58Q4VC31 AC005252.3-201ENST00000623855 2258 ntBASIC14.63□□□□□ -0.07
CCDC58Q4VC31 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC58Q4VC31 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC14.63□□□□□ -0.07
CCDC58Q4VC31 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC58Q4VC31 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
CCDC58Q4VC31 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC58Q4VC31 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC58Q4VC31 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
CCDC58Q4VC31 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC58Q4VC31 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC58Q4VC31 MIR648-201ENST00000385046 94 ntBASIC14.63□□□□□ -0.07
CCDC58Q4VC31 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
CCDC58Q4VC31 AC211429.1-201ENST00000415277 523 ntBASIC14.63□□□□□ -0.07
CCDC58Q4VC31 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC14.63□□□□□ -0.07
CCDC58Q4VC31 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC14.63□□□□□ -0.07
CCDC58Q4VC31 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC14.63□□□□□ -0.07
CCDC58Q4VC31 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC14.63□□□□□ -0.07
CCDC58Q4VC31 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC58Q4VC31 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC14.63□□□□□ -0.07
CCDC58Q4VC31 MIR5100-201ENST00000579544 119 ntBASIC14.63□□□□□ -0.07
CCDC58Q4VC31 AP002414.4-201ENST00000589764 1148 ntBASIC14.63□□□□□ -0.07
CCDC58Q4VC31 IL11-204ENST00000590625 1028 ntTSL 2 BASIC14.63□□□□□ -0.07
CCDC58Q4VC31 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC14.63□□□□□ -0.07
CCDC58Q4VC31 MIR600HG-201ENST00000449175 5984 ntBASIC14.63□□□□□ -0.07
CCDC58Q4VC31 AC005089.1-201ENST00000619486 2241 ntBASIC14.63□□□□□ -0.07
CCDC58Q4VC31 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC14.63□□□□□ -0.07
CCDC58Q4VC31 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
CCDC58Q4VC31 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
CCDC58Q4VC31 ADAM15-209ENST00000449910 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC58Q4VC31 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC58Q4VC31 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
CCDC58Q4VC31 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC14.63□□□□□ -0.07
CCDC58Q4VC31 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC14.63□□□□□ -0.07
CCDC58Q4VC31 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC58Q4VC31 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
CCDC58Q4VC31 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC14.63□□□□□ -0.07
CCDC58Q4VC31 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC58Q4VC31 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC14.63□□□□□ -0.07
CCDC58Q4VC31 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC58Q4VC31 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC58Q4VC31 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC14.62□□□□□ -0.07
CCDC58Q4VC31 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC58Q4VC31 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC58Q4VC31 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms