Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC18.36■□□□□ 0.53
CCNA1P78396 CROCCP4-201ENST00000457096 498 ntBASIC18.36■□□□□ 0.53
CCNA1P78396 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
CCNA1P78396 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
CCNA1P78396 SNX29P1-201ENST00000548357 1007 ntBASIC18.36■□□□□ 0.53
CCNA1P78396 APRT-204ENST00000563655 709 ntTSL 5 BASIC18.36■□□□□ 0.53
CCNA1P78396 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
CCNA1P78396 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC18.36■□□□□ 0.53
CCNA1P78396 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC18.36■□□□□ 0.53
CCNA1P78396 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC18.36■□□□□ 0.53
CCNA1P78396 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
CCNA1P78396 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCNA1P78396 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCNA1P78396 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC18.36■□□□□ 0.53
CCNA1P78396 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCNA1P78396 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCNA1P78396 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC18.35■□□□□ 0.53
CCNA1P78396 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCNA1P78396 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCNA1P78396 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CCNA1P78396 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCNA1P78396 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC18.35■□□□□ 0.53
CCNA1P78396 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
CCNA1P78396 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC18.35■□□□□ 0.53
CCNA1P78396 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CCNA1P78396 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCNA1P78396 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCNA1P78396 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CCNA1P78396 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC18.35■□□□□ 0.53
CCNA1P78396 AC018665.1-201ENST00000622927 1362 ntBASIC18.35■□□□□ 0.53
CCNA1P78396 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CCNA1P78396 PKIG-203ENST00000372887 769 ntTSL 3 BASIC18.35■□□□□ 0.53
CCNA1P78396 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCNA1P78396 EEF1DP4-201ENST00000446006 880 ntBASIC18.35■□□□□ 0.53
CCNA1P78396 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC18.35■□□□□ 0.53
CCNA1P78396 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CCNA1P78396 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC18.35■□□□□ 0.53
CCNA1P78396 USP32P1-208ENST00000506594 1164 ntBASIC18.35■□□□□ 0.53
CCNA1P78396 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC18.35■□□□□ 0.53
CCNA1P78396 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC18.35■□□□□ 0.53
CCNA1P78396 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC18.35■□□□□ 0.53
CCNA1P78396 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC18.35■□□□□ 0.53
CCNA1P78396 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC18.35■□□□□ 0.53
CCNA1P78396 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC18.35■□□□□ 0.53
CCNA1P78396 AL391069.4-201ENST00000609583 481 ntBASIC18.35■□□□□ 0.53
CCNA1P78396 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC18.35■□□□□ 0.53
CCNA1P78396 AL158212.4-201ENST00000624062 1286 ntBASIC18.35■□□□□ 0.53
CCNA1P78396 CU634019.7-201ENST00000624153 1185 ntBASIC18.35■□□□□ 0.53
CCNA1P78396 FP236241.2-201ENST00000624906 1185 ntBASIC18.35■□□□□ 0.53
CCNA1P78396 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC18.35■□□□□ 0.53
CCNA1P78396 ABBA01031660.1-201ENST00000635219 756 ntBASIC18.35■□□□□ 0.53
CCNA1P78396 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CCNA1P78396 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCNA1P78396 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CCNA1P78396 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCNA1P78396 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCNA1P78396 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCNA1P78396 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCNA1P78396 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCNA1P78396 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCNA1P78396 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC18.35■□□□□ 0.53
CCNA1P78396 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CCNA1P78396 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCNA1P78396 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CCNA1P78396 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CCNA1P78396 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
CCNA1P78396 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC18.34■□□□□ 0.53
CCNA1P78396 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC18.34■□□□□ 0.53
CCNA1P78396 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CCNA1P78396 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC18.34■□□□□ 0.53
CCNA1P78396 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CCNA1P78396 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CCNA1P78396 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCNA1P78396 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC18.34■□□□□ 0.53
CCNA1P78396 KRT8P37-201ENST00000451609 1420 ntBASIC18.34■□□□□ 0.53
CCNA1P78396 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
CCNA1P78396 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCNA1P78396 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
CCNA1P78396 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC18.34■□□□□ 0.53
CCNA1P78396 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC18.34■□□□□ 0.53
CCNA1P78396 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCNA1P78396 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCNA1P78396 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCNA1P78396 APOA1-205ENST00000375329 927 ntTSL 2 BASIC18.34■□□□□ 0.53
CCNA1P78396 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CCNA1P78396 RPL13P2-201ENST00000440687 659 ntBASIC18.34■□□□□ 0.53
CCNA1P78396 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC18.34■□□□□ 0.53
CCNA1P78396 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC18.34■□□□□ 0.53
CCNA1P78396 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC18.34■□□□□ 0.53
CCNA1P78396 SLC25A47P1-201ENST00000531577 414 ntBASIC18.34■□□□□ 0.53
CCNA1P78396 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC18.34■□□□□ 0.53
CCNA1P78396 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
CCNA1P78396 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC18.34■□□□□ 0.53
CCNA1P78396 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCNA1P78396 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCNA1P78396 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCNA1P78396 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CCNA1P78396 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC18.34■□□□□ 0.53
CCNA1P78396 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
CCNA1P78396 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms