Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SRP54P61011 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
SRP54P61011 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC16.06■□□□□ 0.16
SRP54P61011 MIR661-201ENST00000384842 89 ntBASIC16.06■□□□□ 0.16
SRP54P61011 TSSK5P-201ENST00000423978 907 ntBASIC16.06■□□□□ 0.16
SRP54P61011 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC16.06■□□□□ 0.16
SRP54P61011 FAM207CP-201ENST00000443486 507 ntBASIC16.06■□□□□ 0.16
SRP54P61011 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC16.06■□□□□ 0.16
SRP54P61011 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC16.06■□□□□ 0.16
SRP54P61011 COX20P2-201ENST00000452636 358 ntBASIC16.06■□□□□ 0.16
SRP54P61011 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC16.06■□□□□ 0.16
SRP54P61011 TERF1P3-201ENST00000505638 1227 ntBASIC16.06■□□□□ 0.16
SRP54P61011 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC16.06■□□□□ 0.16
SRP54P61011 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC16.06■□□□□ 0.16
SRP54P61011 BANF1P1-201ENST00000553684 263 ntBASIC16.06■□□□□ 0.16
SRP54P61011 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC16.06■□□□□ 0.16
SRP54P61011 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC16.06■□□□□ 0.16
SRP54P61011 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC16.06■□□□□ 0.16
SRP54P61011 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC16.06■□□□□ 0.16
SRP54P61011 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SRP54P61011 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC16.06■□□□□ 0.16
SRP54P61011 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SRP54P61011 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
SRP54P61011 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SRP54P61011 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SRP54P61011 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SRP54P61011 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
SRP54P61011 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SRP54P61011 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SRP54P61011 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC16.06■□□□□ 0.16
SRP54P61011 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SRP54P61011 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
SRP54P61011 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SRP54P61011 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SRP54P61011 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
SRP54P61011 LINC01144-201ENST00000626198 1710 ntBASIC16.05■□□□□ 0.16
SRP54P61011 GGT3P-204ENST00000453783 1664 ntBASIC16.05■□□□□ 0.16
SRP54P61011 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC16.05■□□□□ 0.16
SRP54P61011 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC16.05■□□□□ 0.16
SRP54P61011 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC16.05■□□□□ 0.16
SRP54P61011 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
SRP54P61011 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SRP54P61011 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
SRP54P61011 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SRP54P61011 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC16.05■□□□□ 0.16
SRP54P61011 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
SRP54P61011 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC16.05■□□□□ 0.16
SRP54P61011 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC16.05■□□□□ 0.16
SRP54P61011 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
SRP54P61011 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
SRP54P61011 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SRP54P61011 AD000864.1-201ENST00000624076 2295 ntBASIC16.05■□□□□ 0.16
SRP54P61011 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
SRP54P61011 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC16.05■□□□□ 0.16
SRP54P61011 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
SRP54P61011 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
SRP54P61011 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SRP54P61011 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SRP54P61011 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SRP54P61011 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC16.05■□□□□ 0.16
SRP54P61011 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
SRP54P61011 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SRP54P61011 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC16.05■□□□□ 0.16
SRP54P61011 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC16.05■□□□□ 0.16
SRP54P61011 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SRP54P61011 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC16.05■□□□□ 0.16
SRP54P61011 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC16.05■□□□□ 0.16
SRP54P61011 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SRP54P61011 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC16.05■□□□□ 0.16
SRP54P61011 LINC02560-201ENST00000596379 459 ntBASIC16.05■□□□□ 0.16
SRP54P61011 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC16.05■□□□□ 0.16
SRP54P61011 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC16.05■□□□□ 0.16
SRP54P61011 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC16.05■□□□□ 0.16
SRP54P61011 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
SRP54P61011 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SRP54P61011 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SRP54P61011 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SRP54P61011 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SRP54P61011 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC16.05■□□□□ 0.16
SRP54P61011 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC16.05■□□□□ 0.16
SRP54P61011 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SRP54P61011 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SRP54P61011 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC16.05■□□□□ 0.16
SRP54P61011 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SRP54P61011 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SRP54P61011 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
SRP54P61011 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SRP54P61011 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
SRP54P61011 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC16.04■□□□□ 0.16
SRP54P61011 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SRP54P61011 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
SRP54P61011 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SRP54P61011 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC16.04■□□□□ 0.16
SRP54P61011 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
SRP54P61011 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC16.04■□□□□ 0.16
SRP54P61011 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SRP54P61011 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SRP54P61011 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
SRP54P61011 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC16.04■□□□□ 0.16
SRP54P61011 HLA-A-202ENST00000376806 1854 ntBASIC16.04■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms