Protein–RNA interactions for Protein: P53621

COPA, Coatomer subunit alpha, humanhuman

Predictions only

Length 1,224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COPAP53621 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
COPAP53621 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
COPAP53621 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
COPAP53621 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
COPAP53621 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
COPAP53621 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
COPAP53621 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC16.84■□□□□ 0.29
COPAP53621 STK24-203ENST00000397517 4578 ntTSL 2 BASIC16.84■□□□□ 0.29
COPAP53621 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC16.83■□□□□ 0.29
COPAP53621 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
COPAP53621 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
COPAP53621 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.28
COPAP53621 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
COPAP53621 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
COPAP53621 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
COPAP53621 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.28
COPAP53621 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC16.83■□□□□ 0.28
COPAP53621 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC16.83■□□□□ 0.28
COPAP53621 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
COPAP53621 CD81-202ENST00000381036 880 ntTSL 3 BASIC16.83■□□□□ 0.28
COPAP53621 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC16.83■□□□□ 0.28
COPAP53621 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
COPAP53621 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
COPAP53621 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
COPAP53621 AC107890.1-201ENST00000422478 521 ntBASIC16.83■□□□□ 0.28
COPAP53621 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC16.83■□□□□ 0.28
COPAP53621 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC16.83■□□□□ 0.28
COPAP53621 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
COPAP53621 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
COPAP53621 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC16.83■□□□□ 0.28
COPAP53621 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
COPAP53621 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
COPAP53621 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
COPAP53621 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC16.83■□□□□ 0.28
COPAP53621 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC16.83■□□□□ 0.28
COPAP53621 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
COPAP53621 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
COPAP53621 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC16.83■□□□□ 0.28
COPAP53621 LINC00554-201ENST00000564841 3011 ntBASIC16.83■□□□□ 0.28
COPAP53621 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
COPAP53621 MIR4745-201ENST00000577608 62 ntBASIC16.83■□□□□ 0.28
COPAP53621 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
COPAP53621 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC16.83■□□□□ 0.28
COPAP53621 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC16.83■□□□□ 0.28
COPAP53621 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
COPAP53621 HYMAI-201ENST00000635591 3347 ntBASIC16.83■□□□□ 0.28
COPAP53621 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
COPAP53621 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.28
COPAP53621 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COPAP53621 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COPAP53621 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC16.82■□□□□ 0.28
COPAP53621 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC16.82■□□□□ 0.28
COPAP53621 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC16.82■□□□□ 0.28
COPAP53621 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COPAP53621 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC16.82■□□□□ 0.28
COPAP53621 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COPAP53621 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COPAP53621 NARF-206ENST00000457415 1668 ntTSL 5 BASIC16.82■□□□□ 0.28
COPAP53621 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COPAP53621 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
COPAP53621 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COPAP53621 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
COPAP53621 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
COPAP53621 AC103702.1-201ENST00000548801 2630 ntBASIC16.82■□□□□ 0.28
COPAP53621 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COPAP53621 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COPAP53621 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC16.82■□□□□ 0.28
COPAP53621 SPDYE7P-202ENST00000420373 878 ntBASIC16.82■□□□□ 0.28
COPAP53621 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC16.82■□□□□ 0.28
COPAP53621 STARD13-205ENST00000439831 945 ntTSL 2 BASIC16.82■□□□□ 0.28
COPAP53621 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COPAP53621 RNA5SP421-201ENST00000516864 134 ntBASIC16.82■□□□□ 0.28
COPAP53621 AC124947.2-201ENST00000547118 1133 ntBASIC16.82■□□□□ 0.28
COPAP53621 GREM1-201ENST00000560677 623 ntTSL 4 BASIC16.82■□□□□ 0.28
COPAP53621 AC140878.1-201ENST00000565277 250 ntBASIC16.82■□□□□ 0.28
COPAP53621 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC16.82■□□□□ 0.28
COPAP53621 NKG7-205ENST00000600427 520 ntTSL 3 BASIC16.82■□□□□ 0.28
COPAP53621 AJ011932.1-201ENST00000621707 465 ntBASIC16.82■□□□□ 0.28
COPAP53621 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC16.82■□□□□ 0.28
COPAP53621 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
COPAP53621 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
COPAP53621 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COPAP53621 MYB-242ENST00000618728 3545 ntTSL 5 BASIC16.82■□□□□ 0.28
COPAP53621 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
COPAP53621 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC16.82■□□□□ 0.28
COPAP53621 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
COPAP53621 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
COPAP53621 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC16.82■□□□□ 0.28
COPAP53621 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
COPAP53621 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC16.82■□□□□ 0.28
COPAP53621 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC16.82■□□□□ 0.28
COPAP53621 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
COPAP53621 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC16.82■□□□□ 0.28
COPAP53621 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COPAP53621 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
COPAP53621 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC16.82■□□□□ 0.28
COPAP53621 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
COPAP53621 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COPAP53621 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
COPAP53621 FO538757.1-201ENST00000623083 1397 ntBASIC16.81■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 64.3 ms