Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 GID4-202ENST00000376345 1391 ntTSL 3 BASIC16.42■□□□□ 0.22
PTPN4P29074 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PTPN4P29074 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PTPN4P29074 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC16.42■□□□□ 0.22
PTPN4P29074 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
PTPN4P29074 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PTPN4P29074 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PTPN4P29074 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PTPN4P29074 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PTPN4P29074 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PTPN4P29074 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC16.42■□□□□ 0.22
PTPN4P29074 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
PTPN4P29074 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC16.42■□□□□ 0.22
PTPN4P29074 CRYGEP-201ENST00000412192 528 ntBASIC16.42■□□□□ 0.22
PTPN4P29074 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC16.42■□□□□ 0.22
PTPN4P29074 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC16.42■□□□□ 0.22
PTPN4P29074 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC16.42■□□□□ 0.22
PTPN4P29074 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC16.42■□□□□ 0.22
PTPN4P29074 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
PTPN4P29074 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC16.42■□□□□ 0.22
PTPN4P29074 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC16.42■□□□□ 0.22
PTPN4P29074 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC16.42■□□□□ 0.22
PTPN4P29074 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
PTPN4P29074 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PTPN4P29074 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC16.42■□□□□ 0.22
PTPN4P29074 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC16.42■□□□□ 0.22
PTPN4P29074 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
PTPN4P29074 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PTPN4P29074 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
PTPN4P29074 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PTPN4P29074 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC16.42■□□□□ 0.22
PTPN4P29074 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC16.42■□□□□ 0.22
PTPN4P29074 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
PTPN4P29074 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PTPN4P29074 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PTPN4P29074 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
PTPN4P29074 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC16.41■□□□□ 0.22
PTPN4P29074 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PTPN4P29074 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC16.41■□□□□ 0.22
PTPN4P29074 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
PTPN4P29074 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
PTPN4P29074 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
PTPN4P29074 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
PTPN4P29074 NID2-208ENST00000617139 3827 ntTSL 5 BASIC16.41■□□□□ 0.22
PTPN4P29074 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
PTPN4P29074 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
PTPN4P29074 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC16.41■□□□□ 0.22
PTPN4P29074 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
PTPN4P29074 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
PTPN4P29074 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC16.41■□□□□ 0.22
PTPN4P29074 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
PTPN4P29074 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC16.41■□□□□ 0.22
PTPN4P29074 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
PTPN4P29074 SP100-205ENST00000409824 1802 ntTSL 5 BASIC16.41■□□□□ 0.22
PTPN4P29074 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC16.41■□□□□ 0.22
PTPN4P29074 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
PTPN4P29074 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PTPN4P29074 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PTPN4P29074 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC16.41■□□□□ 0.22
PTPN4P29074 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PTPN4P29074 COA5-202ENST00000409997 557 ntTSL 4 BASIC16.41■□□□□ 0.22
PTPN4P29074 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC16.41■□□□□ 0.22
PTPN4P29074 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC16.41■□□□□ 0.22
PTPN4P29074 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PTPN4P29074 STK19B-204ENST00000512515 211 ntBASIC16.41■□□□□ 0.22
PTPN4P29074 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC16.41■□□□□ 0.22
PTPN4P29074 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC16.41■□□□□ 0.22
PTPN4P29074 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC16.41■□□□□ 0.22
PTPN4P29074 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC16.41■□□□□ 0.22
PTPN4P29074 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
PTPN4P29074 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC16.41■□□□□ 0.22
PTPN4P29074 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
PTPN4P29074 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC16.41■□□□□ 0.22
PTPN4P29074 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
PTPN4P29074 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
PTPN4P29074 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
PTPN4P29074 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
PTPN4P29074 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
PTPN4P29074 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
PTPN4P29074 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC16.41■□□□□ 0.22
PTPN4P29074 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC16.41■□□□□ 0.22
PTPN4P29074 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PTPN4P29074 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PTPN4P29074 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
PTPN4P29074 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC16.41■□□□□ 0.22
PTPN4P29074 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
PTPN4P29074 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
PTPN4P29074 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
PTPN4P29074 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC16.41■□□□□ 0.22
PTPN4P29074 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
PTPN4P29074 PPT1-215ENST00000641471 2368 ntBASIC16.41■□□□□ 0.22
PTPN4P29074 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PTPN4P29074 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PTPN4P29074 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PTPN4P29074 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PTPN4P29074 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PTPN4P29074 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PTPN4P29074 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC16.4■□□□□ 0.22
PTPN4P29074 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PTPN4P29074 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 71.9 ms