Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC12.47□□□□□ -0.41
HLA-DMBP28068 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC12.47□□□□□ -0.41
HLA-DMBP28068 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC12.47□□□□□ -0.41
HLA-DMBP28068 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
HLA-DMBP28068 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC12.47□□□□□ -0.41
HLA-DMBP28068 CSF3-203ENST00000394148 622 ntTSL 3 BASIC12.47□□□□□ -0.41
HLA-DMBP28068 HCG4-201ENST00000418983 998 ntBASIC12.47□□□□□ -0.41
HLA-DMBP28068 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
HLA-DMBP28068 STARD13-205ENST00000439831 945 ntTSL 2 BASIC12.47□□□□□ -0.41
HLA-DMBP28068 AC108073.2-201ENST00000464002 357 ntBASIC12.47□□□□□ -0.41
HLA-DMBP28068 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC12.47□□□□□ -0.41
HLA-DMBP28068 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC12.47□□□□□ -0.41
HLA-DMBP28068 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC12.47□□□□□ -0.41
HLA-DMBP28068 RPS29-206ENST00000557111 488 ntTSL 2 BASIC12.47□□□□□ -0.41
HLA-DMBP28068 ETFA-208ENST00000559602 792 ntTSL 3 BASIC12.47□□□□□ -0.41
HLA-DMBP28068 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC12.47□□□□□ -0.41
HLA-DMBP28068 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC12.47□□□□□ -0.41
HLA-DMBP28068 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC12.47□□□□□ -0.41
HLA-DMBP28068 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
HLA-DMBP28068 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC12.47□□□□□ -0.41
HLA-DMBP28068 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
HLA-DMBP28068 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC12.47□□□□□ -0.41
HLA-DMBP28068 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC12.47□□□□□ -0.41
HLA-DMBP28068 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC12.47□□□□□ -0.41
HLA-DMBP28068 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
HLA-DMBP28068 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
HLA-DMBP28068 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC12.47□□□□□ -0.41
HLA-DMBP28068 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC12.47□□□□□ -0.41
HLA-DMBP28068 AC012569.1-201ENST00000591191 1524 ntBASIC12.47□□□□□ -0.41
HLA-DMBP28068 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
HLA-DMBP28068 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
HLA-DMBP28068 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
HLA-DMBP28068 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC12.46□□□□□ -0.41
HLA-DMBP28068 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC12.46□□□□□ -0.41
HLA-DMBP28068 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
HLA-DMBP28068 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.41
HLA-DMBP28068 CDC14C-201ENST00000428251 1719 ntBASIC12.46□□□□□ -0.41
HLA-DMBP28068 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC12.46□□□□□ -0.41
HLA-DMBP28068 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
HLA-DMBP28068 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
HLA-DMBP28068 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC12.46□□□□□ -0.41
HLA-DMBP28068 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
HLA-DMBP28068 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC12.46□□□□□ -0.41
HLA-DMBP28068 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC12.46□□□□□ -0.41
HLA-DMBP28068 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC12.46□□□□□ -0.41
HLA-DMBP28068 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC12.46□□□□□ -0.41
HLA-DMBP28068 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
HLA-DMBP28068 MIR574-201ENST00000385209 96 ntBASIC12.46□□□□□ -0.41
HLA-DMBP28068 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
HLA-DMBP28068 MRPL20P1-201ENST00000400819 433 ntBASIC12.46□□□□□ -0.41
HLA-DMBP28068 MIR940-201ENST00000401276 94 ntBASIC12.46□□□□□ -0.41
HLA-DMBP28068 AC098831.1-202ENST00000438821 336 ntBASIC12.46□□□□□ -0.41
HLA-DMBP28068 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.41
HLA-DMBP28068 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC12.46□□□□□ -0.41
HLA-DMBP28068 KRT18P58-201ENST00000527480 1120 ntBASIC12.46□□□□□ -0.41
HLA-DMBP28068 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC12.46□□□□□ -0.41
HLA-DMBP28068 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC12.46□□□□□ -0.41
HLA-DMBP28068 CIPC-205ENST00000555437 566 ntTSL 3 BASIC12.46□□□□□ -0.41
HLA-DMBP28068 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC12.46□□□□□ -0.41
HLA-DMBP28068 AC005593.1-201ENST00000624894 515 ntBASIC12.46□□□□□ -0.41
HLA-DMBP28068 CAND2-206ENST00000626378 333 ntTSL 5 BASIC12.46□□□□□ -0.41
HLA-DMBP28068 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC12.46□□□□□ -0.41
HLA-DMBP28068 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
HLA-DMBP28068 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
HLA-DMBP28068 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
HLA-DMBP28068 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.41
HLA-DMBP28068 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
HLA-DMBP28068 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
HLA-DMBP28068 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC12.46□□□□□ -0.42
HLA-DMBP28068 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC12.46□□□□□ -0.42
HLA-DMBP28068 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.42
HLA-DMBP28068 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.42
HLA-DMBP28068 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.42
HLA-DMBP28068 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
HLA-DMBP28068 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.42
HLA-DMBP28068 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
HLA-DMBP28068 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC12.46□□□□□ -0.42
HLA-DMBP28068 LINC02447-202ENST00000501888 2146 ntBASIC12.46□□□□□ -0.42
HLA-DMBP28068 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
HLA-DMBP28068 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC12.46□□□□□ -0.42
HLA-DMBP28068 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
HLA-DMBP28068 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.42
HLA-DMBP28068 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC12.46□□□□□ -0.42
HLA-DMBP28068 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
HLA-DMBP28068 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC12.45□□□□□ -0.42
HLA-DMBP28068 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC12.45□□□□□ -0.42
HLA-DMBP28068 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HLA-DMBP28068 AC005622.1-201ENST00000636801 1703 ntBASIC12.45□□□□□ -0.42
HLA-DMBP28068 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC12.45□□□□□ -0.42
HLA-DMBP28068 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC12.45□□□□□ -0.42
HLA-DMBP28068 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
HLA-DMBP28068 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC12.45□□□□□ -0.42
HLA-DMBP28068 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC12.45□□□□□ -0.42
HLA-DMBP28068 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HLA-DMBP28068 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC12.45□□□□□ -0.42
HLA-DMBP28068 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
HLA-DMBP28068 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC12.45□□□□□ -0.42
HLA-DMBP28068 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HLA-DMBP28068 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC12.45□□□□□ -0.42
HLA-DMBP28068 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms