Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
COL5A3P25940 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
COL5A3P25940 AL138709.1-201ENST00000614840 1693 ntBASIC20.05■□□□□ 0.8
COL5A3P25940 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL5A3P25940 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
COL5A3P25940 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL5A3P25940 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL5A3P25940 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC20.05■□□□□ 0.8
COL5A3P25940 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC20.05■□□□□ 0.8
COL5A3P25940 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL5A3P25940 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC20.05■□□□□ 0.8
COL5A3P25940 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
COL5A3P25940 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL5A3P25940 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL5A3P25940 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
COL5A3P25940 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC20.05■□□□□ 0.8
COL5A3P25940 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL5A3P25940 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL5A3P25940 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL5A3P25940 AC080129.2-201ENST00000418353 430 ntTSL 3 BASIC20.05■□□□□ 0.8
COL5A3P25940 KRT8P13-201ENST00000463294 1010 ntBASIC20.05■□□□□ 0.8
COL5A3P25940 RNA5SP423-201ENST00000517127 109 ntBASIC20.05■□□□□ 0.8
COL5A3P25940 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
COL5A3P25940 AC005833.2-201ENST00000527518 1249 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
COL5A3P25940 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC20.05■□□□□ 0.8
COL5A3P25940 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL5A3P25940 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
COL5A3P25940 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL5A3P25940 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL5A3P25940 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC20.04■□□□□ 0.8
COL5A3P25940 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
COL5A3P25940 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL5A3P25940 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL5A3P25940 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL5A3P25940 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL5A3P25940 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
COL5A3P25940 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL5A3P25940 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC20.04■□□□□ 0.8
COL5A3P25940 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
COL5A3P25940 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL5A3P25940 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
COL5A3P25940 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL5A3P25940 AC104306.2-201ENST00000451877 341 ntBASIC20.04■□□□□ 0.8
COL5A3P25940 AP001582.1-201ENST00000525856 295 ntBASIC20.04■□□□□ 0.8
COL5A3P25940 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
COL5A3P25940 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC20.04■□□□□ 0.8
COL5A3P25940 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC20.04■□□□□ 0.8
COL5A3P25940 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
COL5A3P25940 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC20.04■□□□□ 0.8
COL5A3P25940 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC20.04■□□□□ 0.8
COL5A3P25940 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL5A3P25940 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
COL5A3P25940 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC20.03■□□□□ 0.8
COL5A3P25940 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC20.03■□□□□ 0.8
COL5A3P25940 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
COL5A3P25940 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL5A3P25940 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
COL5A3P25940 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL5A3P25940 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
COL5A3P25940 C2orf27AP3-201ENST00000434123 579 ntBASIC20.03■□□□□ 0.8
COL5A3P25940 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC20.03■□□□□ 0.8
COL5A3P25940 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC20.03■□□□□ 0.8
COL5A3P25940 UBL5-208ENST00000593087 320 ntTSL 3 BASIC20.03■□□□□ 0.8
COL5A3P25940 AL354718.3-201ENST00000616414 581 ntBASIC20.03■□□□□ 0.8
COL5A3P25940 CR382287.1-201ENST00000623954 586 ntBASIC20.03■□□□□ 0.8
COL5A3P25940 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
COL5A3P25940 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL5A3P25940 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
COL5A3P25940 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL5A3P25940 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL5A3P25940 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
COL5A3P25940 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL5A3P25940 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC20.03■□□□□ 0.8
COL5A3P25940 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL5A3P25940 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC20.03■□□□□ 0.8
COL5A3P25940 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC20.03■□□□□ 0.8
COL5A3P25940 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL5A3P25940 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC20.03■□□□□ 0.8
COL5A3P25940 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
COL5A3P25940 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL5A3P25940 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL5A3P25940 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL5A3P25940 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL5A3P25940 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL5A3P25940 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL5A3P25940 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
COL5A3P25940 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL5A3P25940 HLA-DPB2-205ENST00000435074 1188 ntBASIC20.02■□□□□ 0.8
COL5A3P25940 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC20.02■□□□□ 0.8
COL5A3P25940 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC20.02■□□□□ 0.8
COL5A3P25940 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL5A3P25940 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC20.02■□□□□ 0.8
COL5A3P25940 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
COL5A3P25940 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL5A3P25940 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL5A3P25940 ABHD18-206ENST00000611882 1493 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
COL5A3P25940 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC20.02■□□□□ 0.79
COL5A3P25940 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
COL5A3P25940 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC20.02■□□□□ 0.79
COL5A3P25940 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC20.02■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 52.8 ms