Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC15.36■□□□□ 0.05
COL5A1P20908 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC15.36■□□□□ 0.05
COL5A1P20908 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC15.36■□□□□ 0.05
COL5A1P20908 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC15.36■□□□□ 0.05
COL5A1P20908 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC15.36■□□□□ 0.05
COL5A1P20908 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC15.36■□□□□ 0.05
COL5A1P20908 POU5F1P6-201ENST00000466990 990 ntBASIC15.36■□□□□ 0.05
COL5A1P20908 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
COL5A1P20908 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC15.36■□□□□ 0.05
COL5A1P20908 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC15.36■□□□□ 0.05
COL5A1P20908 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC15.36■□□□□ 0.05
COL5A1P20908 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC15.36■□□□□ 0.05
COL5A1P20908 GPR182-203ENST00000622922 591 ntBASIC15.36■□□□□ 0.05
COL5A1P20908 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
COL5A1P20908 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
COL5A1P20908 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
COL5A1P20908 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
COL5A1P20908 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
COL5A1P20908 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
COL5A1P20908 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
COL5A1P20908 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
COL5A1P20908 AC106886.4-201ENST00000623557 2502 ntBASIC15.35■□□□□ 0.05
COL5A1P20908 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
COL5A1P20908 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC15.35■□□□□ 0.05
COL5A1P20908 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC15.35■□□□□ 0.05
COL5A1P20908 BAATP1-201ENST00000412284 1225 ntBASIC15.35■□□□□ 0.05
COL5A1P20908 ELP6-209ENST00000446787 894 ntTSL 3 BASIC15.35■□□□□ 0.05
COL5A1P20908 PFN1P12-201ENST00000455938 534 ntBASIC15.35■□□□□ 0.05
COL5A1P20908 AC106760.1-201ENST00000508690 800 ntBASIC15.35■□□□□ 0.05
COL5A1P20908 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC15.35■□□□□ 0.05
COL5A1P20908 EMC4-209ENST00000559421 497 ntTSL 2 BASIC15.35■□□□□ 0.05
COL5A1P20908 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC15.35■□□□□ 0.05
COL5A1P20908 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
COL5A1P20908 AC244669.2-201ENST00000612320 853 ntBASIC15.35■□□□□ 0.05
COL5A1P20908 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC15.35■□□□□ 0.05
COL5A1P20908 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
COL5A1P20908 AD000864.1-201ENST00000624076 2295 ntBASIC15.35■□□□□ 0.05
COL5A1P20908 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
COL5A1P20908 UBALD1-205ENST00000590891 2641 ntBASIC15.35■□□□□ 0.05
COL5A1P20908 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
COL5A1P20908 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
COL5A1P20908 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
COL5A1P20908 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
COL5A1P20908 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
COL5A1P20908 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC15.35■□□□□ 0.05
COL5A1P20908 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
COL5A1P20908 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
COL5A1P20908 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
COL5A1P20908 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC15.34■□□□□ 0.05
COL5A1P20908 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
COL5A1P20908 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
COL5A1P20908 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
COL5A1P20908 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
COL5A1P20908 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
COL5A1P20908 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
COL5A1P20908 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
COL5A1P20908 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
COL5A1P20908 TPO-206ENST00000382269 1155 ntTSL 5 BASIC15.34■□□□□ 0.05
COL5A1P20908 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
COL5A1P20908 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
COL5A1P20908 AC080129.2-201ENST00000418353 430 ntTSL 3 BASIC15.34■□□□□ 0.05
COL5A1P20908 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
COL5A1P20908 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC15.34■□□□□ 0.05
COL5A1P20908 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC15.34■□□□□ 0.05
COL5A1P20908 AP001889.1-201ENST00000525414 633 ntBASIC15.34■□□□□ 0.05
COL5A1P20908 AC000095.1-201ENST00000603208 874 ntBASIC15.34■□□□□ 0.05
COL5A1P20908 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC15.34■□□□□ 0.05
COL5A1P20908 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC15.34■□□□□ 0.05
COL5A1P20908 AC009542.2-202ENST00000619004 1067 ntBASIC15.34■□□□□ 0.05
COL5A1P20908 AL139099.5-201ENST00000635274 300 ntBASIC15.34■□□□□ 0.05
COL5A1P20908 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
COL5A1P20908 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
COL5A1P20908 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
COL5A1P20908 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
COL5A1P20908 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
COL5A1P20908 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC15.34■□□□□ 0.05
COL5A1P20908 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC15.34■□□□□ 0.05
COL5A1P20908 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC15.34■□□□□ 0.05
COL5A1P20908 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
COL5A1P20908 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
COL5A1P20908 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
COL5A1P20908 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
COL5A1P20908 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
COL5A1P20908 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
COL5A1P20908 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC15.34■□□□□ 0.05
COL5A1P20908 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC15.34■□□□□ 0.05
COL5A1P20908 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
COL5A1P20908 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
COL5A1P20908 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC15.34■□□□□ 0.05
COL5A1P20908 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
COL5A1P20908 KRT18P64-201ENST00000434946 1219 ntBASIC15.33■□□□□ 0.05
COL5A1P20908 BCRP2-202ENST00000447763 634 ntBASIC15.33■□□□□ 0.05
COL5A1P20908 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
COL5A1P20908 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC15.33■□□□□ 0.05
COL5A1P20908 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC15.33■□□□□ 0.05
COL5A1P20908 BCRP6-201ENST00000510112 632 ntBASIC15.33■□□□□ 0.05
COL5A1P20908 BCRP7-201ENST00000511549 544 ntBASIC15.33■□□□□ 0.05
COL5A1P20908 ZNF767P-206ENST00000513792 565 ntBASIC15.33■□□□□ 0.05
COL5A1P20908 AC243960.2-201ENST00000600996 747 ntBASIC15.33■□□□□ 0.05
COL5A1P20908 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC15.33■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms